Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_O10
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   1.5  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    27   2.5  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   3.4  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.4  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    27   3.4  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    27   3.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   4.4  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   5.9  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   5.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.9  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   7.8  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 98  RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 226
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 19/76 (25%), Positives = 28/76 (36%)
 Frame = -3

Query: 704 PPSPGISGTSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKXPLSSEAPSAYLTP 525
           PPS  +  +   +  P    P  P +  +  NP TP+     P      +  A +  L P
Sbjct: 246 PPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF-SPINPYYAKSWNHTASAPLLPP 304

Query: 524 SSLGMXKGVSPPYFQV 477
              G+  G   PY  V
Sbjct: 305 ---GLKNGSDYPYLSV 317


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 253 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 158
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = -1

Query: 352 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 173
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+       +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 172 LSASIQASLPSSEIYRQL 119
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = -3

Query: 698 SPGISGTSTRSS-NPXFHTPTTPDLTSISINPLTP-----Y*KEFAPGLKXPLSSEAPSA 537
           SP +S     S  +P    P+TP   + SI+P TP     Y  + A  L  PLS  + +A
Sbjct: 284 SPELSADKVLSHCSPIDARPSTPSCPNASISPKTPNTGDHYGFDGAEYLGTPLSVGSTTA 343

Query: 536 YL 531
           YL
Sbjct: 344 YL 345


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -3

Query: 704 PPSPGISGTSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKXPLSSEAPSAYLTP 525
           PPSPGI     R+S   F +PT     S+       +    + G+  P  S A  A+L+ 
Sbjct: 495 PPSPGIVTPPQRTSPSFFVSPTESTRQSLDSRRSFEHSTSSSSGIS-PSHSSASLAHLSQ 553

Query: 524 SS 519
           +S
Sbjct: 554 AS 555


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
 Frame = -3

Query: 704  PPSPGISGTSTRSSNPXFHTPTTPDL--TSISINPLTPY*KEFAPGLKXPLSSEAPSAYL 531
            P SPG S +     +   ++PT+P    TS S +P +P     +P       S +P++  
Sbjct: 1560 PSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPS 1619

Query: 530  TPSSLGMXKGVSPPY 486
               +       SP Y
Sbjct: 1620 YSPTSPSYSPTSPSY 1634


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = -3

Query: 701 PSPGISGTSTRSSNPXFHTPTTPDLTSISINPLTP-Y*KEFAPGLKXPLSSEAPSAYLTP 525
           P   +S          FHTPT P  T +S    +P    +    +  PLS +A S  LT 
Sbjct: 123 PPNSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTS 180

Query: 524 SSLGMXKGVSPPYFQVNDESQA 459
           S L   +  SPP   V  +S +
Sbjct: 181 SPLKDFQS-SPPLSTVLQKSHS 201


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 463 KLRALLVVIPRILRSPPPTHPLIEDV 386
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = -3

Query: 731 LAVSPLCIXPPSPGISGTSTRSSNPXFHTPTTPDLTSIS 615
           LA S       S  IS +ST   N  FH PT    TS S
Sbjct: 790 LATSLYLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSS 828


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 140 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 42
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,557
Number of Sequences: 5004
Number of extensions: 59564
Number of successful extensions: 224
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)