Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_O10
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    29   5.5  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    28   9.6  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   9.6  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   9.6  

>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = -3

Query: 701 PSPGISGTSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKXPLSSEAPSAYLTPS 522
           P+P  + T+T  +NP   TPTT   TS   N ++P+       +     + AP    +P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548

Query: 521 SLGMXKGVSPP 489
           +       S P
Sbjct: 549 TTPTHTTASQP 559


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
           protein Y53C10A.10 protein.
          Length = 1582

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
 Frame = -3

Query: 704 PPSPGISGTSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAP-GLKXPLSSEAPSAYLT 528
           P S  I+ TS+ S+ P   +  T   T    +  +    E     ++   SS +PS + T
Sbjct: 695 PDSTIITSTSSTSTRPGTSSTATDSPTMDDTSKTSTVTSEGTTLSIESTESSASPSDFTT 754

Query: 527 PSSLGMXKGVSPPYFQVNDESQASRLISRHSTHT 426
           P  +G    VS    Q +  S +S   +   T T
Sbjct: 755 PDFIGFTSSVSRTSEQYSSSSPSSDTTTMDVTST 788


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 718 PYASXHPPLGFRVHQPDHQIPDS 650
           P +S HPPL    H  +H  PD+
Sbjct: 66  PTSSHHPPLNSSSHHSNHNYPDT 88


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 563  PLSSEAPSAYLTPSSLGMXKGVSPP 489
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 563  PLSSEAPSAYLTPSSLGMXKGVSPP 489
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,063,828
Number of Sequences: 27780
Number of extensions: 335358
Number of successful extensions: 1025
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)