Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_O09
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 123 2e-28
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 123 2e-28
05_07_0129 - 27886738-27886767,27887043-27887312,27888407-278884... 30 2.5
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.3
02_03_0252 - 16882960-16884106,16884173-16884518,16892586-16892724 29 3.3
01_06_0533 + 30052538-30054004 29 3.3
06_03_0543 + 21967787-21970261 29 5.8
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.6
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 123 bits (296), Expect = 2e-28
Identities = 53/90 (58%), Positives = 67/90 (74%)
Frame = -3
Query: 627 EXRXLVVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 448
E R L++ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WL
Sbjct: 122 EPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWL 181
Query: 447 LAREVLRLRGVLPRDQRWDVVVDLFFYRDP 358
LAR VL++RG + +WDV+VDLFFYRDP
Sbjct: 182 LARMVLQMRGTILPGHKWDVMVDLFFYRDP 211
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -2
Query: 778 LKTPXNXLXF*XRPFGXGXXXXFPAHTGXXLIAGRFKPGGFTNXIQAAF 632
++ P + + RP+G F +TG IAGR PG FTN +Q +F
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 123 bits (296), Expect = 2e-28
Identities = 53/90 (58%), Positives = 68/90 (75%)
Frame = -3
Query: 627 EXRXLVVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 448
E R L++ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WL
Sbjct: 122 EPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWL 181
Query: 447 LAREVLRLRGVLPRDQRWDVVVDLFFYRDP 358
LAR VL++RG + +WDV+VDLFFYRDP
Sbjct: 182 LARMVLQMRGTILPGHKWDVMVDLFFYRDP 211
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -2
Query: 778 LKTPXNXLXF*XRPFGXGXXXXFPAHTGXXLIAGRFKPGGFTNXIQAAF 632
++ P + + RP+G F +TG IAGR PG FTN +Q +F
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
>05_07_0129 -
27886738-27886767,27887043-27887312,27888407-27888482,
27889148-27889962
Length = 396
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +2
Query: 470 EWEDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVMG*WSCAGSNTTXXRXSRECSLDX 649
EW++L+L G A+++ SGE L A G V+G A TT +R S
Sbjct: 72 EWDELLLSGAALASESSGELQLVAASPG---DHNQVVGGGGGANYRTTATAAARR-SYRG 127
Query: 650 VSKTPW 667
V + PW
Sbjct: 128 VRRRPW 133
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 209 TRCSSCFWSTPCSRRMVCPGTR*VEHN 129
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
>02_03_0252 - 16882960-16884106,16884173-16884518,16892586-16892724
Length = 543
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 299 FCWYHSLFLGLVVHPFHFLQGSR 367
FC ++L LGL+VHP F SR
Sbjct: 45 FCGTNTLVLGLIVHPSRFTTASR 67
>01_06_0533 + 30052538-30054004
Length = 488
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -3
Query: 684 LRDVSNQGVLLTXSKLHSREXRXLVVLDPAQDHQPITEASYVNIPVIALC 535
L D+ + L H+ LVV+D A+D +P+ + ++ + A+C
Sbjct: 229 LEDMGDHRALTVKHGSHASHGSSLVVVDLAEDEEPVGDGAWRRLRSSAMC 278
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 462 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 373
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 209 TRCSSCFWSTPCSRRMVCPGTR*VEHN 129
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,224,116
Number of Sequences: 37544
Number of extensions: 413856
Number of successful extensions: 1176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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