Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_N24
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0281 + 26912419-26913099 33 0.23
11_07_0002 - 27171791-27172222 32 0.69
09_02_0279 + 6702517-6702948 32 0.69
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351 29 1.2
07_03_0369 - 17356806-17356934,17357145-17357278,17357989-173582... 31 1.2
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 31 1.2
11_03_0140 - 10637818-10638059,10638189-10638461,10639963-106404... 30 2.1
12_02_0635 - 21430245-21431156 29 3.7
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 29 3.7
11_06_0610 - 25449085-25453284 29 3.7
11_01_0763 + 6402901-6403971,6404581-6404826 29 3.7
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669... 29 3.7
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79... 29 4.9
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 4.9
02_01_0302 - 2021221-2023305 29 4.9
02_03_0278 - 17238075-17238998 28 8.5
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466... 28 8.5
>05_06_0281 + 26912419-26913099
Length = 226
Score = 33.5 bits (73), Expect = 0.23
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 237 QPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRD 410
+P G P + P P+ ++ +R+P GP W PG+P T+T L G D
Sbjct: 82 RPVGPTPPPPSHPVVPTPTQLAADDDGGLLRRPGGPTPPSPWHPGVP--TQTQLAGGD 137
>11_07_0002 - 27171791-27172222
Length = 143
Score = 31.9 bits (69), Expect = 0.69
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 428 RSTVYRVPTRQAGSGPAGYSGTPAAPSGRPDG----LPYRDGRRF 306
RS+ + +AGS PAG G+PA G P G P GR F
Sbjct: 55 RSSAASTSSARAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
>09_02_0279 + 6702517-6702948
Length = 143
Score = 31.9 bits (69), Expect = 0.69
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 428 RSTVYRVPTRQAGSGPAGYSGTPAAPSGRPDG----LPYRDGRRF 306
RS+ + +AGS PAG G+PA G P G P GR F
Sbjct: 55 RSSAASTSSARAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
Length = 415
Score = 29.1 bits (62), Expect(2) = 1.2
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = +2
Query: 95 HGVVSRPRAQGF*DPPT-KRLPCTLTPDV-----RSPPRSEPG*GRGATAVNTTTRRRGS 256
HG +S PR+ P +R P +TP V RSP P RG A + + RG
Sbjct: 50 HGALSAPRSGDEEITPWWRRSPSAVTPPVYPHVERSP---SPPIARGWPADDDERQERGE 106
Query: 257 PQGRPA 274
P G PA
Sbjct: 107 PSGSPA 112
Score = 20.6 bits (41), Expect(2) = 1.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 347 QTVPLVSRNTPLDQNQPA 400
Q P V ++TPL +PA
Sbjct: 153 QPAPHVEQSTPLPAKEPA 170
>07_03_0369 -
17356806-17356934,17357145-17357278,17357989-17358247,
17358322-17358410,17358644-17358794,17358889-17359032,
17359358-17359477,17359595-17359769,17359842-17360215
Length = 524
Score = 31.1 bits (67), Expect = 1.2
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 141 PLNDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAA---HPKDAQPTEPSRRIEGSET 311
P + SP L PT+ L P G LPRS A HP+DA P+ PS R +G
Sbjct: 28 PEDGSPFLRLPTASDL----PVPAGQLPRSAAVGLIRALNLHPRDASPS-PSSRGDGDVP 82
Query: 312 SAVSVRQPV 338
+ V +P+
Sbjct: 83 AGTLVERPI 91
>07_03_0111 +
13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = +2
Query: 137 PPTKRLPCTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEA 292
PP P D + P EP + +A T RR GSP PA A +A
Sbjct: 123 PPPPPPPPPSPKDAAADPAKEPSGSKAGSAAATGGRRTGSPPPSPAPVAKDA 174
>11_03_0140 -
10637818-10638059,10638189-10638461,10639963-10640473,
10640556-10640768,10642717-10642784,10642893-10642958,
10644862-10644961
Length = 490
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = +3
Query: 135 THPLNDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETS 314
T P+N +P L +NP T G A+P D+ +P R ET
Sbjct: 94 TEPVNTTPTTLPTQGGSSAAENPSTSSNQSTGTSGASGFANPTDS-VAQPPRSTSRDETP 152
Query: 315 AVSVRQ 332
++S ++
Sbjct: 153 SISEKE 158
>12_02_0635 - 21430245-21431156
Length = 303
Score = 29.5 bits (63), Expect = 3.7
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Frame = +3
Query: 120 PKDFRTHPLNDSPALLHPTSDPLRGQ--NPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRR 293
P+ R P P + P RG+ P G P+ P GA + QP P+
Sbjct: 198 PQSSRRPPARTPPPERRESPSPPRGRPRTPPPPPGSPKKPATP-GAVVVE--QPGPPTDH 254
Query: 294 IEGSETSAVSV--RQPVGPPRRCRWCP 368
E E V V R P PPR CP
Sbjct: 255 REAGELVMVDVVVRPPTTPPRPYVGCP 281
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 29.5 bits (63), Expect = 3.7
Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Frame = +3
Query: 144 LNDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVS 323
+ND A H D + G+ PD QP A P+D QP PS + TS
Sbjct: 179 INDLDAGRH---DAVHGEQPDGERDADEHRGQPHQRAAPRDVQPPSPSS--SPATTSPAH 233
Query: 324 VRQPVGPPRRCRWCPGIPRW-TRTSLPGRDAIHRRPV 431
R+ G P P W + LP R R P+
Sbjct: 234 PRRAHGQVLLGSH-PRGPHWRVQGHLPQRQGPRRVPI 269
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = +3
Query: 174 TSDPLRGQNPDEVGGLPRSTLQ-PDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPR 350
T P + P+E P S + P AHP P+E S E+S + + PP
Sbjct: 767 TPSPPKSSPPEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPS 826
Query: 351 RCRWCPGIPRWTRTSLPGRDA 413
P P ++S P +A
Sbjct: 827 GHEGTPPSP--VKSSSPPPEA 845
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 29.5 bits (63), Expect = 3.7
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Frame = +2
Query: 134 DPPTKRL-PCTLTPDVRSP---PRSEP---G*GRGATAVNTTTRRRGSPQGRPADGAFEA 292
DP + L P + +PD+ P P G GRGA R RG G DGA +
Sbjct: 24 DPSEETLDPASPSPDLAIPWPDPAGVDAGGGGGRGAATHQGRRRWRGVGSGGGGDGAATS 83
Query: 293 NRRL*NVGRLGTAARRAAQ 349
RRL AA R A+
Sbjct: 84 RRRLARQPAAAVAAARCAR 102
>04_03_0849 +
20265511-20265984,20266452-20266617,20266694-20266905,
20267154-20267647,20267732-20267780,20267922-20268251
Length = 574
Score = 29.5 bits (63), Expect = 3.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 318 VSVRQPVGPPRRCRWCPGIPRWTR 389
+ + + V PP R WCP RW R
Sbjct: 1 MEIARVVAPPLRLAWCPASRRWGR 24
>09_01_0043 +
790859-790873,791410-791603,792521-792605,792719-793075
Length = 216
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 398 QAGSGPAGYSGTPAAPSGRPDGLPYRDG 315
++GSG AG G+ A GR DG RDG
Sbjct: 118 RSGSGKAGCVGSRADQDGRLDGREVRDG 145
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 175 RPIPSEVRTRMR*GGYRGQHYNQTARLTPR 264
R PSE+R+R R G RG+ Y+Q +PR
Sbjct: 121 RKKPSEMRSRDRISGSRGRSYDQRYSRSPR 150
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/56 (26%), Positives = 20/56 (35%)
Frame = +3
Query: 120 PKDFRTHPLNDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPS 287
P+ THP SP + + P PD P + P + P P PS
Sbjct: 534 PQSTPTHPSYPSPPVTYTPPPPTSADRPDVRFAPPPGSYGPIPSTPPSSGSPPSPS 589
>02_03_0278 - 17238075-17238998
Length = 307
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Frame = +3
Query: 126 DFRTHPLNDSPALLHPTSDPLRGQNPDE----VGG-----LPRSTLQPDGAAHPKDAQPT 278
D T + P + +DP + + P + +GG R + QP G + +P
Sbjct: 194 DSETEGTDTEPEIEQDITDPSKDETPVQCITFIGGPRTLSTARKSTQPPGKKPKPEPEPL 253
Query: 279 EPSRRIEGSETSAVSVRQPVGP 344
PSR GS A ++ P P
Sbjct: 254 LPSRGDSGSHEPATTLFLPQDP 275
>01_06_1141 +
34845834-34845931,34846110-34846198,34846535-34846686,
34847473-34847583,34847702-34847818,34847989-34848156,
34848563-34848703
Length = 291
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 138 HPLNDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAH 257
HPL P +P G P++ G PR T+ +GAAH
Sbjct: 91 HPLPQVPNFCGNGFNPWTGTLPEK-NGFPRGTMGWEGAAH 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,133,094
Number of Sequences: 37544
Number of extensions: 437889
Number of successful extensions: 1649
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1643
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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