Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_N18
(851 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 28 7.3
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 7.3
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 28 7.3
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 7.3
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 7.3
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 28 9.7
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 9.7
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 28 9.7
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 9.7
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 549 GGPLXAGPXXPPXSXGXPG 493
GGP AGP PP + G PG
Sbjct: 241 GGPGPAGPKGPPGAAGAPG 259
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -3
Query: 558 GXXGGPLXAGPXXPPXSXGXPGXXLXYXKC 469
G G GP PP + G PG Y KC
Sbjct: 300 GYGGAAGEDGPEGPPGAPGLPGKDAEYCKC 329
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 549 GGPLXAGPXXPPXSXGXPG 493
GGP AGP PP + G PG
Sbjct: 241 GGPGPAGPKGPPGAAGAPG 259
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -3
Query: 558 GXXGGPLXAGPXXPPXSXGXPGXXLXYXKC 469
G G GP PP + G PG Y KC
Sbjct: 300 GYGGAAGEDGPEGPPGAPGLPGKDAEYCKC 329
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 549 GGPLXAGPXXPPXSXGXPG 493
GGP AGP PP + G PG
Sbjct: 241 GGPGPAGPKGPPGAAGAPG 259
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 549 GGPLXAGPXXPPXSXGXPG 493
GGP AGP PP + G PG
Sbjct: 241 GGPGPAGPKGPPGAAGAPG 259
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 564 AXGXXGGPLXAGPXXPPXSXGXPG 493
A G GP AGP PP G PG
Sbjct: 188 APGGGSGPGPAGPAGPPGPDGNPG 211
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 564 AXGXXGGPLXAGPXXPPXSXGXPG 493
A G GP AGP PP G PG
Sbjct: 188 APGGGSGPGPAGPAGPPGPDGNPG 211
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3
Query: 558 GXXGGPLXAGPXXPPXSXGXPG 493
G G P AGP PP S G PG
Sbjct: 216 GEPGPPGEAGPQGPPGSPGQPG 237
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3
Query: 558 GXXGGPLXAGPXXPPXSXGXPG 493
G G P AGP PP S G PG
Sbjct: 215 GEPGPPGEAGPQGPPGSPGQPG 236
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3
Query: 558 GXXGGPLXAGPXXPPXSXGXPG 493
G G P AGP PP S G PG
Sbjct: 216 GEPGPPGEAGPQGPPGSPGQPG 237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,639,858
Number of Sequences: 27780
Number of extensions: 79893
Number of successful extensions: 929
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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