Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_N17
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.28 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   2.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   6.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
 Frame = +1

Query: 559 PPPG--GXXXPPPPPPP 603
           PPPG  G   PPPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 559 PPPGGXXXPPPPPPP 603
           PPP      PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPP 766



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 642 PPPPPPXKXXKKXPPP 689
           PPPPPP       PPP
Sbjct: 762 PPPPPPPGVAGAGPPP 777



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 642 PPPPPPXKXXKKXPPP 689
           PPPPPP       PPP
Sbjct: 763 PPPPPPGVAGAGPPPP 778



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 559 PPPGGXXXPPPPPPP 603
           PPP G     PPPPP
Sbjct: 765 PPPPGVAGAGPPPPP 779


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 568 GGXXXPPPPPPP 603
           GG   PPPPPPP
Sbjct: 303 GGLPPPPPPPPP 314


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
 Frame = +1

Query: 559 PPPG--GXXXPPPPPPP 603
           PPPG      PPPPPPP
Sbjct: 14  PPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 562 PPGGXXXPPPPPPP 603
           PPG    PPPPPPP
Sbjct: 5   PPGNP--PPPPPPP 16



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 642 PPPPPPXKXXKKXPPP 689
           PPPPPP       PPP
Sbjct: 11  PPPPPPGFEPPSQPPP 26



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 559 PPPGGXXXPPPPPPP 603
           PPP G   P  PPPP
Sbjct: 13  PPPPGFEPPSQPPPP 27


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 562 PPGGXXXPPPPPP 600
           PP G   PPPPPP
Sbjct: 354 PPQGRSAPPPPPP 366



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 642 PPPPPPXKXXKKXPP 686
           PPPPPP +  +  PP
Sbjct: 312 PPPPPPSRRNRGKPP 326


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 642  PPPPPPXKXXKKXPP 686
            PPPPPP    K  PP
Sbjct: 1882 PPPPPPMALPKAGPP 1896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,744
Number of Sequences: 5004
Number of extensions: 19200
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)