Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_N16
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 174 6e-44
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 172 3e-43
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 33 0.26
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.2
06_03_0543 + 21967787-21970261 29 5.5
02_02_0084 + 6637145-6638677 29 5.5
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.3
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 28 7.3
04_04_0907 + 29304830-29305030,29305296-29305547 28 7.3
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 9.6
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 174 bits (424), Expect = 6e-44
Identities = 78/135 (57%), Positives = 101/135 (74%)
Frame = -2
Query: 719 ACLXSCRHTGATXIAXRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYANIPVI 540
A L ++TGA IA R TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP I
Sbjct: 90 AVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTI 149
Query: 539 ALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYR 360
A C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYR
Sbjct: 150 AFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYR 209
Query: 359 DPEESEKDEQQAREQ 315
DPEE+++ E++A Q
Sbjct: 210 DPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 172 bits (418), Expect = 3e-43
Identities = 76/131 (58%), Positives = 98/131 (74%)
Frame = -2
Query: 719 ACLXSCRHTGATXIAXRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYANIPVI 540
A L ++TGA IA R TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP I
Sbjct: 90 AVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTI 149
Query: 539 ALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYR 360
A C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG + +WDV+VDLFFYR
Sbjct: 150 AFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYR 209
Query: 359 DPEESEKDEQQ 327
DPEE+++ E++
Sbjct: 210 DPEEAKEQEEE 220
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 33.1 bits (72), Expect = 0.26
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = -2
Query: 722 SACLXSCRHTGATXIAXRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYANI 549
++C RHT +T R TP AF + AA E R+ + + ++ EA Y +I
Sbjct: 262 NSCWGVFRHTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHI 321
Query: 548 PVIALCNTDSPLR 510
V + + + P++
Sbjct: 322 EVFDMRSPEQPMQ 334
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 458 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 369
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>02_02_0084 + 6637145-6638677
Length = 510
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = -2
Query: 701 RHTGATXIAXRFTPGAF---TNQIQAAFREPRLLIVLDPAQ-DHQPITEASYANIPVIAL 534
RH GAT + PG F ++ A ++LD + D + ++ +P +AL
Sbjct: 66 RHGGATVLRVNMPPGPFLAGDPRVVALLDARSFRVLLDDSMVDKADTLDGTF--MPSLAL 123
Query: 533 CNTDSPLRFVDIAIPCNTK 477
PL F+D A P + K
Sbjct: 124 FGGHRPLAFLDAADPRHAK 142
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +1
Query: 472 EDLVLHGIAMSTNLSGESVLHKAITGMLAYEASVMG*WSCAGSNTIKRRGSRNAAWIWLV 651
ED L+ I + S E + ITG V+ S G + +K R +RN+A W
Sbjct: 4 EDEALYEIRRLASGSHEILREGEITGTSGAAGGVLSYLSLQGVSKLKERWTRNSALGWSK 63
Query: 652 KAPGVKRXAIXVA 690
K + + V+
Sbjct: 64 KRSRINAALLFVS 76
>04_04_0907 + 29304830-29305030,29305296-29305547
Length = 150
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 596 PAQDHQPITE-ASYANIPVIALCNTDSPLRFVDIAIPCNT 480
P D + E A+ +NIP+I L + D P +IA C T
Sbjct: 23 PESDRPRLAEVATDSNIPLIDLASPDKPRVIAEIAQACRT 62
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 357 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 473
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,766,531
Number of Sequences: 37544
Number of extensions: 408110
Number of successful extensions: 1059
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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