Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_N13
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   193   2e-50
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   191   9e-50
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    38   0.002
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.4  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.1  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   7.1  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  193 bits (471), Expect = 2e-50
 Identities = 95/153 (62%), Positives = 111/153 (72%)
 Frame = -1

Query: 789 VLCSHRXPR*FFVIXSRPFGQRAVLKFAAHTGXTLIAXRFTPGAFTNQIQAAFRELRXLI 610
           V+ +   P    VI SRP+G RAVLKFAAHTG T IA RFTPG FTN I   +RE R +I
Sbjct: 67  VIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLII 126

Query: 609 VLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 430
           V DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVL
Sbjct: 127 VTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVL 186

Query: 429 RLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 331
           RLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 187 RLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  191 bits (466), Expect = 9e-50
 Identities = 93/155 (60%), Positives = 111/155 (71%)
 Frame = -1

Query: 789 VLCSHRXPR*FFVIXSRPFGQRAVLKFAAHTGXTLIAXRFTPGAFTNQIQAAFRELRXLI 610
           V+ +   P    V+ +R +G RAVLKFAAHTG T IA RFTPG FTN I   +RE R ++
Sbjct: 66  VIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIV 125

Query: 609 VLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 430
           V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVL
Sbjct: 126 VTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVL 185

Query: 429 RLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 325
           R+RG L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 186 RVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -1

Query: 615 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 439
           +++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 183 MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 576 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 466
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 468 IGLMWWLLAREVLRLRGVLPRDQRWD 391
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 413 FPVTSAGML--WLICSSTVTLKKVKRM 339
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 687 LIAXRFTPGAFTNQIQAAFRELRXLIVLDPAQDHQPITEASYVN 556
           L+  +FTP   +N   A  R  R          H P+ ++ YVN
Sbjct: 128 LLNFQFTPRTNSNAFSAPPRRSRGYNTYGQGSGHHPMDKSRYVN 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,434
Number of Sequences: 5004
Number of extensions: 55474
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)