Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_N10
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617 34 0.15
05_01_0550 + 4820086-4821255,4822112-4822321,4822429-4822524,482... 31 1.0
03_01_0168 + 1382531-1383931,1384028-1384150 31 1.0
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 30 1.8
11_03_0047 - 9311913-9312659 30 2.4
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 29 3.1
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 29 5.5
02_05_0513 - 29682657-29682956 28 7.2
09_02_0468 - 9608922-9610061 28 9.6
02_02_0186 + 7594197-7594281,7594409-7594513,7595062-7595238,759... 28 9.6
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482... 28 9.6
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 9.6
>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
Length = 507
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -1
Query: 362 PSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSST 228
P PA QP Q + ++ + PT+ + ++S R + SS+P +ST
Sbjct: 140 PILPAPQPVQPQQQLVSPVAAPTSSSSSSSDRSSGSSKPARATST 184
>05_01_0550 +
4820086-4821255,4822112-4822321,4822429-4822524,
4822610-4822828,4823201-4823395,4823466-4823612,
4823712-4823861,4825015-4825145,4825234-4825477
Length = 853
Score = 31.1 bits (67), Expect = 1.0
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -1
Query: 683 YPKGE-KIKRELVAKLQELPEIYDQIGKSLKPLPARNQXIDQLVELESFLKMRVYETTSA 507
Y GE + K +AKL+EL ++ D I K R+ I+QLV + K + A
Sbjct: 659 YEDGEDETKGVYIAKLEELKKVGDPIEIRYKEWAERSSSINQLVHCINGFKEVALSNSQA 718
Query: 506 AESHTLSLLQQLPAE-SEPALW 444
+ +S Q++ E SE +W
Sbjct: 719 FDHIDMSEKQKVLDECSEAEIW 740
>03_01_0168 + 1382531-1383931,1384028-1384150
Length = 507
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 278 ASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHAR 165
A +RRN SS P+ ++ G+ H+ G +A + W+ R
Sbjct: 65 AGNRRNDSSPPSDDAAPTGLGHIVFGIAASSELWKSRR 102
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 377 NVKHSPSKPASQPQQDHRSRLTALPGPTAR-NFTASSRRNSSSQPTTGSSTLGV 219
N++ SP P+S R+ + GPT R N ++S ++NSS+ G LGV
Sbjct: 178 NLEPSPPPPSSSAPPS-RTPSNSSDGPTTRDNISSSKKQNSSTLKIVGFVFLGV 230
>11_03_0047 - 9311913-9312659
Length = 248
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = -1
Query: 326 RSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARSIQAQS 147
R ++ P P T+SS +S S PTTGS G+ H + A+M A + Q+
Sbjct: 44 RELASSSPEPCRGLITSSSSSSSPSSPTTGSFCDGIDH--KSLRANM-----AAPVAEQA 96
Query: 146 RLTAD 132
R+ AD
Sbjct: 97 RVLAD 101
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 317 LTALPGPTARNFTASSRRNSSSQPT 243
+ A+PGPT+RN NSSS P+
Sbjct: 510 IPAIPGPTSRNVPMEENSNSSSIPS 534
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 359 SKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTL 225
S SQPQQ H ++P PT +A ++S P S +
Sbjct: 393 SSGGSQPQQTHPITKPSVPAPTVSGVSAGVSNSASQWPKVTQSDI 437
>02_05_0513 - 29682657-29682956
Length = 99
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +1
Query: 211 RCVTPSVDDPVVGCDELLRRDEAVKLRAVGPGSAVSRLRWS 333
RC T +DPV G + RRD +K RA+ P +LRWS
Sbjct: 44 RCGTRVAEDPVGGEACIGRRDGWIKGRALLPEKI--KLRWS 82
>09_02_0468 - 9608922-9610061
Length = 379
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 325 AADSPRFLVLRHATSLPHHAATVHRSPRPDHQR 227
+ DSPR+ R S+P T+ RSPR +R
Sbjct: 77 SVDSPRWRGARRRPSVPDMELTLSRSPRAGEER 109
>02_02_0186 +
7594197-7594281,7594409-7594513,7595062-7595238,
7595716-7595886,7596198-7596289,7596302-7596407,
7597516-7597601,7597861-7598501,7599065-7599107
Length = 501
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/81 (24%), Positives = 31/81 (38%)
Frame = -1
Query: 353 PASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWR 174
P +Q R L GP N TA + S STL H + +++
Sbjct: 362 PVAQKLSSTPMRPETLHGPNPVNETAPKAQKSVKSSKFRDSTLSSKHRSSKRQEYAEFYG 421
Query: 173 HARSIQAQSRLTADFEQHWRH 111
+ + Q S++ D +H RH
Sbjct: 422 SSETPQVSSKVPKDRLRH-RH 441
>01_05_0461 +
22446797-22447050,22447171-22447288,22447895-22448217,
22448908-22449056,22449324-22449463,22449606-22449757,
22449862-22450021,22450071-22450088
Length = 437
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -3
Query: 345 AASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQ 199
A+STG +P +W+ G++ L F AA+ ++ + + WQ
Sbjct: 26 ASSTGEERPDLPWAWALGSERRVLALALAFRAANALLVRTYFNPDEHWQ 74
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 587 PARNQXIDQLVELESFLKMRVYETTSAAESHTLSLLQQLPAE 462
P +N+ LVELESF+K ET E+ ++++ E
Sbjct: 3103 PVKNEDKTDLVELESFVKNVSLETFGTEENTMSEYVKEMEVE 3144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,965,053
Number of Sequences: 37544
Number of extensions: 333432
Number of successful extensions: 1363
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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