Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_N10
(779 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC072435-1|AAH72435.1| 506|Homo sapiens CDK5 regulatory subunit... 35 0.29
BC009957-1|AAH09957.1| 506|Homo sapiens CDK5 regulatory subunit... 35 0.29
AK223387-1|BAD97107.1| 506|Homo sapiens CDK5 regulatory subunit... 35 0.29
AK023722-1|BAB14657.1| 506|Homo sapiens protein ( Homo sapiens ... 35 0.29
AF343090-1|AAK69655.1| 434|Homo sapiens HSF-27 protein protein. 35 0.29
AF217982-1|AAG17225.1| 281|Homo sapiens CDK5 regulatory subunit... 35 0.29
AB062433-1|BAB93496.1| 506|Homo sapiens OK/SW-cl.114 protein. 35 0.29
BC011826-1|AAH11826.1| 540|Homo sapiens CCR4-NOT transcription ... 30 8.1
BC002597-1|AAH02597.1| 540|Homo sapiens CCR4-NOT transcription ... 30 8.1
AF180473-1|AAF29827.1| 540|Homo sapiens Not2p protein. 30 8.1
AF044215-1|AAQ13426.1| 378|Homo sapiens unknown protein. 30 8.1
>BC072435-1|AAH72435.1| 506|Homo sapiens CDK5 regulatory subunit
associated protein 3 protein.
Length = 506
Score = 35.1 bits (77), Expect = 0.29
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -1
Query: 581 RNQXIDQLVELESFLKMRVYETTSAAESHTLSLLQQLPA 465
RNQ +D+L+ELE FL R E + A+ ++S Q PA
Sbjct: 350 RNQFLDELMELEIFLAQRAVELSEEADVLSVSQFQLAPA 388
>BC009957-1|AAH09957.1| 506|Homo sapiens CDK5 regulatory subunit
associated protein 3 protein.
Length = 506
Score = 35.1 bits (77), Expect = 0.29
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -1
Query: 581 RNQXIDQLVELESFLKMRVYETTSAAESHTLSLLQQLPA 465
RNQ +D+L+ELE FL R E + A+ ++S Q PA
Sbjct: 350 RNQFLDELMELEIFLAQRAVELSEEADVLSVSQFQLAPA 388
>AK223387-1|BAD97107.1| 506|Homo sapiens CDK5 regulatory subunit
associated protein 3 isoform b variant protein.
Length = 506
Score = 35.1 bits (77), Expect = 0.29
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -1
Query: 581 RNQXIDQLVELESFLKMRVYETTSAAESHTLSLLQQLPA 465
RNQ +D+L+ELE FL R E + A+ ++S Q PA
Sbjct: 350 RNQFLDELMELEIFLAQRAVELSEEADVLSVSQFQLAPA 388
>AK023722-1|BAB14657.1| 506|Homo sapiens protein ( Homo sapiens
cDNA FLJ13660 fis, clone PLACE1011586, highly similar to
Rattus norvegicus clone C53 CDK5 activator-binding
protein mRNA. ).
Length = 506
Score = 35.1 bits (77), Expect = 0.29
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -1
Query: 581 RNQXIDQLVELESFLKMRVYETTSAAESHTLSLLQQLPA 465
RNQ +D+L+ELE FL R E + A+ ++S Q PA
Sbjct: 350 RNQFLDELMELEIFLAQRAVELSEEADVLSVSQFQLAPA 388
>AF343090-1|AAK69655.1| 434|Homo sapiens HSF-27 protein protein.
Length = 434
Score = 35.1 bits (77), Expect = 0.29
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -1
Query: 581 RNQXIDQLVELESFLKMRVYETTSAAESHTLSLLQQLPA 465
RNQ +D+L+ELE FL R E + A+ ++S Q PA
Sbjct: 350 RNQFLDELMELEIFLAQRAVELSEEADVLSVSQFQLAPA 388
>AF217982-1|AAG17225.1| 281|Homo sapiens CDK5 regulatory subunit
associated protein IC53-2 protein.
Length = 281
Score = 35.1 bits (77), Expect = 0.29
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -1
Query: 581 RNQXIDQLVELESFLKMRVYETTSAAESHTLSLLQQLPA 465
RNQ +D+L+ELE FL R E + A+ ++S Q PA
Sbjct: 125 RNQFLDELMELEIFLAQRAVELSEEADVLSVSQFQLAPA 163
>AB062433-1|BAB93496.1| 506|Homo sapiens OK/SW-cl.114 protein.
Length = 506
Score = 35.1 bits (77), Expect = 0.29
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -1
Query: 581 RNQXIDQLVELESFLKMRVYETTSAAESHTLSLLQQLPA 465
RNQ +D+L+ELE FL R E + A+ ++S Q PA
Sbjct: 350 RNQFLDELMELEIFLAQRAVELSEEADVLSVSQFQLAPA 388
>BC011826-1|AAH11826.1| 540|Homo sapiens CCR4-NOT transcription
complex, subunit 2 protein.
Length = 540
Score = 30.3 bits (65), Expect = 8.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = -1
Query: 359 SKPASQPQQD---HRSRLTALPGPTARNFTASSRRNSSSQPTTGSST 228
+KPA++ QD H ALPG + ++ T+S+ + S+ T+G +T
Sbjct: 263 TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTT 309
>BC002597-1|AAH02597.1| 540|Homo sapiens CCR4-NOT transcription
complex, subunit 2 protein.
Length = 540
Score = 30.3 bits (65), Expect = 8.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = -1
Query: 359 SKPASQPQQD---HRSRLTALPGPTARNFTASSRRNSSSQPTTGSST 228
+KPA++ QD H ALPG + ++ T+S+ + S+ T+G +T
Sbjct: 263 TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTT 309
>AF180473-1|AAF29827.1| 540|Homo sapiens Not2p protein.
Length = 540
Score = 30.3 bits (65), Expect = 8.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = -1
Query: 359 SKPASQPQQD---HRSRLTALPGPTARNFTASSRRNSSSQPTTGSST 228
+KPA++ QD H ALPG + ++ T+S+ + S+ T+G +T
Sbjct: 263 TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTT 309
>AF044215-1|AAQ13426.1| 378|Homo sapiens unknown protein.
Length = 378
Score = 30.3 bits (65), Expect = 8.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = -1
Query: 359 SKPASQPQQD---HRSRLTALPGPTARNFTASSRRNSSSQPTTGSST 228
+KPA++ QD H ALPG + ++ T+S+ + S+ T+G +T
Sbjct: 264 TKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTT 310
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,963,031
Number of Sequences: 237096
Number of extensions: 1801424
Number of successful extensions: 5879
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5860
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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