Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_N10
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 30 2.1
U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek (dictyo... 29 4.9
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos... 29 4.9
AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical... 29 4.9
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 28 8.6
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 28 8.6
AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical ... 28 8.6
AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical ... 28 8.6
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 359 SKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPT---TGSSTLGVTHLRRGSS 195
S AS Q S TA PG + T +S + SSS T TGS+T+ T + +GSS
Sbjct: 925 STSASSSTQPIASSTTANPGSSTSGPTIASTQGSSSTQTNSNTGSTTVATT-VTQGSS 981
>U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical
protein T09B4.5a protein.
Length = 327
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 377 NVKHSPSKPASQPQQDHR--SRLTALPGPTARNFTASSRRNSSSQPTTGS 234
NVK +PS+ AS+ R S+ P T + +A SR S +PT S
Sbjct: 52 NVKKTPSRSASKSATRGRTASKTPKTPSKTPSSASARSRSRSRGRPTNAS 101
>AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform b protein.
Length = 849
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 368 HSPSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPT 243
+S P+ P R ++ PGP+ + SS+ N S PT
Sbjct: 690 NSDRSPSRTPSPASSPRASSSPGPSRDDEVTSSQNNKESSPT 731
>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform a protein.
Length = 1085
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 368 HSPSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPT 243
+S P+ P R ++ PGP+ + SS+ N S PT
Sbjct: 926 NSDRSPSRTPSPASSPRASSSPGPSRDDEVTSSQNNKESSPT 967
>AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical
protein Y54G2A.13 protein.
Length = 610
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 371 KHSPSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSST 228
KHS ++ A+ P Q+ + +T T+ ++ +SS PTT + T
Sbjct: 179 KHSTTEEATSPSQNETTSVTTQNPTTSNQKNETTDEATSSPPTTTTPT 226
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -1
Query: 647 AKLQELPEIYDQIGKSLKPLPARNQXIDQLVELESFLKMRVYETTSAAESHTLSLLQQL 471
AKL E I ++ + +K L ARN +++ +E E + + + S AE L ++L
Sbjct: 1105 AKLAENNSIIAKLQRLIKELTARNAELEEELEAERNSRQKSDRSRSEAERELEELTERL 1163
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -1
Query: 647 AKLQELPEIYDQIGKSLKPLPARNQXIDQLVELESFLKMRVYETTSAAESHTLSLLQQL 471
AKL E I ++ + +K L ARN +++ +E E + + + S AE L ++L
Sbjct: 1105 AKLAENNSIIAKLQRLIKELTARNAELEEELEAERNSRQKSDRSRSEAERELEELTERL 1163
>AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical
protein D1007.13a protein.
Length = 142
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -3
Query: 342 ASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQLCT 190
+ST S P +S +YG+ + P F + ++WG T P L T
Sbjct: 22 SSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 72
>AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical
protein D1007.13b protein.
Length = 247
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -3
Query: 342 ASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQLCT 190
+ST S P +S +YG+ + P F + ++WG T P L T
Sbjct: 127 SSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,737,843
Number of Sequences: 27780
Number of extensions: 261294
Number of successful extensions: 1000
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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