Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_N10
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.20 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    25   0.79 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   7.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -1

Query: 305 PGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARS 162
           P P  R  +A S   SSS P  G++  G    R G   +    +  +S
Sbjct: 511 PSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKS 558


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 274 HHAATVHRSPRPDHQRLGSHISGVA 200
           HH   VHR  +P++  L S   G A
Sbjct: 26  HHNGVVHRDLKPENLLLASKAKGAA 50


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = +1

Query: 520 SYTRIFRNDXXXXXXXMXWFLAGSG---LSDFPIWSYISGSSCSFATN 654
           ++  I RND       +     G+G   L  +P WS+    +CS  T+
Sbjct: 77  TFVTILRNDGVPSSLNVISNKIGNGGPLLEPYPNWSWAKNQNCSGITS 124


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = -2

Query: 274 HHAATVHRSPRPDHQRLGSHISGVAALHTWTTGD---THAAFKLSLDSPQT-SSSTGDTH 107
           ++ A +   P P +    SHI    ++ T+T       H   ++      T S  T + H
Sbjct: 429 YNPALIQSQPSPQYPSTSSHILQQPSIRTYTQQQFPYVHDTLQIQPQEQLTLSKVTSNYH 488

Query: 106 AAFQA 92
             FQ+
Sbjct: 489 EEFQS 493


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 365 SPSKPASQPQQDH 327
           SPS   SQP QDH
Sbjct: 45  SPSLLTSQPHQDH 57


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 274 HHAATVHRSPRPDHQR 227
           HH    HR  R D++R
Sbjct: 156 HHGMAYHRGHRKDYER 171


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 586 GSGLSDFPIWSYISGSSCSFATNSLLI 666
           G  L+ +P W++    +CS  T++  I
Sbjct: 99  GPLLAPYPDWTWAKNENCSGITSAYKI 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,324
Number of Sequences: 438
Number of extensions: 2829
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)