Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_N09
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0543 + 10427321-10428315,10428440-10429154                       30   2.7  
12_02_1174 - 26696869-26698191                                         28   8.3  
04_03_0904 + 20717005-20718087                                         28   8.3  

>09_02_0543 + 10427321-10428315,10428440-10429154
          Length = 569

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = -3

Query: 637 PXXRPHPNPXXPXXPXXPXXRPXPXXXXSXAPXPTXXXQXPP 512
           P   P   P  P  P  P   P P    S AP P      PP
Sbjct: 27  PPAIPESGPPPPPAPDMPPPPPTPAPQSSPAPPPAPDMTPPP 68


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/42 (30%), Positives = 14/42 (33%)
 Frame = -3

Query: 637 PXXRPHPNPXXPXXPXXPXXRPXPXXXXSXAPXPTXXXQXPP 512
           P  +P P P  P  P  P   P P       P      Q PP
Sbjct: 142 PPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPP 183


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = -3

Query: 637 PXXRPHPNPXXPXXPXXPXXRPXPXXXXSXAPXPT 533
           P  +P P P     P  P  +P P       P PT
Sbjct: 275 PTYKPQPKPTPTPTPYTPTPKPNPPPTYKPQPKPT 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,249,790
Number of Sequences: 37544
Number of extensions: 165136
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)