Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_N08
(807 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 209 4e-55
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 209 4e-55
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 30 0.44
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 28 1.8
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.4
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.1
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 7.2
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 9.6
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 209 bits (510), Expect = 4e-55
Identities = 111/234 (47%), Positives = 144/234 (61%), Gaps = 1/234 (0%)
Frame = -3
Query: 805 LAHTQMKLLNSDKRRVHIMESNLXGYHXGQSEMXPEKXWRNLSXSILCLPKMK*LTALXS 626
LAHTQ++ +++ H+ME + G + + + + + +
Sbjct: 161 LAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGV 220
Query: 625 PXXKDTK-VSLLVGTQRSYPVRHTRXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMN 449
K + + GT+R P + R LRKVACIGAWHP+ V +TVARAG GY HRT++N
Sbjct: 221 TRGKGNEGTTARWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLN 279
Query: 448 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 269
KIYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM+ G GP
Sbjct: 280 SKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPV 332
Query: 268 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPVDKAAFMGTLKKD 107
KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTP + F+GTLKKD
Sbjct: 333 KRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 75.8 bits (178), Expect = 7e-15
Identities = 37/73 (50%), Positives = 46/73 (63%)
Frame = -2
Query: 770 QKKGSHYGIQLXGVPXRTK*NGPRENXEKPIPVDSVFAQDEMIDCIGVTXXKGYKGVTSR 591
QKK IQ+ G K RE+ EK + + S F Q+EMID IGVT KG +G T+R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 590 WHTKKLPRKTHKG 552
W TK+LPRKTH+G
Sbjct: 233 WGTKRLPRKTHRG 245
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 209 bits (510), Expect = 4e-55
Identities = 111/234 (47%), Positives = 144/234 (61%), Gaps = 1/234 (0%)
Frame = -3
Query: 805 LAHTQMKLLNSDKRRVHIMESNLXGYHXGQSEMXPEKXWRNLSXSILCLPKMK*LTALXS 626
LAHTQ++ +++ H+ME + G + + + + + +
Sbjct: 161 LAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGV 220
Query: 625 PXXKDTK-VSLLVGTQRSYPVRHTRXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMN 449
K + + GT+R P + R LRKVACIGAWHP+ V +TVARAG GY HRT++N
Sbjct: 221 TRGKGNEGTTARWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLN 279
Query: 448 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 269
KIYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM+ G GP
Sbjct: 280 SKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPV 332
Query: 268 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPVDKAAFMGTLKKD 107
KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTP + F+GTLKKD
Sbjct: 333 KRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 75.8 bits (178), Expect = 7e-15
Identities = 37/73 (50%), Positives = 46/73 (63%)
Frame = -2
Query: 770 QKKGSHYGIQLXGVPXRTK*NGPRENXEKPIPVDSVFAQDEMIDCIGVTXXKGYKGVTSR 591
QKK IQ+ G K RE+ EK + + S F Q+EMID IGVT KG +G T+R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 590 WHTKKLPRKTHKG 552
W TK+LPRKTH+G
Sbjct: 233 WGTKRLPRKTHRG 245
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.9 bits (64), Expect = 0.44
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +2
Query: 398 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKXPCVSYGVA 577
NFA+L+ SL ++ +F++H +T + T+Y + + +N N K + + +
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY--ENSLGIGRANVSN--KEKAIKHVLY 432
Query: 578 SLCANEK 598
SL AN +
Sbjct: 433 SLPANSR 439
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 662 FAQDEMIDCIGVTXXKGYKGVTSRW 588
F + +D G+T KG+ GV RW
Sbjct: 145 FKPKQYVDVKGITKGKGFAGVMKRW 169
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 365 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 487
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 128 HGYTQEGSYSRRSCGYHNPS 69
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 350 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 478
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 410 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 535
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,778
Number of Sequences: 5004
Number of extensions: 66974
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -