Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_N08
(807 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 218 4e-57
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 212 3e-55
07_01_0761 + 5849466-5850677 31 1.4
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.3
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 7.6
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 218 bits (533), Expect = 4e-57
Identities = 103/153 (67%), Positives = 120/153 (78%)
Frame = -3
Query: 571 PVRHTRXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 392
P + R LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295
Query: 391 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 212
+ A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R AL
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
Query: 211 EKINLKFIDTSSKFGHGRFQTPVDKAAFMGTLK 113
E+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 77.0 bits (181), Expect = 2e-14
Identities = 38/74 (51%), Positives = 48/74 (64%)
Frame = -2
Query: 773 RQKKGSHYGIQLXGVPXRTK*NGPRENXEKPIPVDSVFAQDEMIDCIGVTXXKGYKGVTS 594
+QKK IQ+ G K + + EK IPVD+VF +DEMID IGVT KGY+GV +
Sbjct: 175 KQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVT 234
Query: 593 RWHTKKLPRKTHKG 552
RW +LPRKTH+G
Sbjct: 235 RWGVTRLPRKTHRG 248
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 212 bits (517), Expect = 3e-55
Identities = 111/224 (49%), Positives = 142/224 (63%), Gaps = 1/224 (0%)
Frame = -3
Query: 805 LAHTQMKLLNSDK-RRVHIMESNLXGYHXGQSEMXPEKXWRNLSXSILCLPKMK*LTALX 629
+AHTQ++ + K ++ H+ME + G K + K + + +
Sbjct: 163 IAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIG 222
Query: 628 SPXXKDTKVSLLVGTQRSYPVRHTRXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMN 449
K + + P + R LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMN
Sbjct: 223 VTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMN 282
Query: 448 KKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 269
KK+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPK
Sbjct: 283 KKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPK 336
Query: 268 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPVDK 137
KR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K
Sbjct: 337 KRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 77.0 bits (181), Expect = 2e-14
Identities = 38/74 (51%), Positives = 48/74 (64%)
Frame = -2
Query: 773 RQKKGSHYGIQLXGVPXRTK*NGPRENXEKPIPVDSVFAQDEMIDCIGVTXXKGYKGVTS 594
+QKK IQ+ G K + + EK IPVD+VF +DEMID IGVT KGY+GV +
Sbjct: 175 KQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVT 234
Query: 593 RWHTKKLPRKTHKG 552
RW +LPRKTH+G
Sbjct: 235 RWGVTRLPRKTHRG 248
>07_01_0761 + 5849466-5850677
Length = 403
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -3
Query: 604 VSLLVGTQRSYPVRHTRXLRKVACI--GAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 431
V+LLVG R V V+ + G HP SFT+ RA H K+ RI
Sbjct: 129 VALLVGNDRRLRVLDAAASAAVSLVPDGEHHPINCSFTLGRAASSSGEH------KVLRI 182
Query: 430 GQGIH 416
G +H
Sbjct: 183 GTVVH 187
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 370 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 275
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -3
Query: 514 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 365
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 364 SEKSITPMGGFPHYGEVNN 308
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,423,749
Number of Sequences: 37544
Number of extensions: 447691
Number of successful extensions: 1034
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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