Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_N07
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    54   3e-08
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.1  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   4.1  

>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 23/36 (63%), Positives = 29/36 (80%)
 Frame = -3

Query: 638 MNNQYXCNRPISVSYAFKKDVQGERHGSAAERLLXA 531
           MNNQ+  N+PI+VSYAFK++ +GERHG  AER L A
Sbjct: 160 MNNQFLMNKPITVSYAFKREGKGERHGDIAERKLAA 195


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 1   FFFFFLQNYTIYFSPFPI 54
           F FF  Q + +YFS FPI
Sbjct: 135 FLFFLSQIFIVYFSSFPI 152


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 526 FCAXSNLSAAXPCLSPCTSFLNA 594
           F A SN  A  PC S C +F+N+
Sbjct: 92  FNAVSNSQANHPCCSNCRAFINS 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,466,183
Number of Sequences: 5004
Number of extensions: 18835
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)