Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_N06
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   127   2e-30
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   123   3e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    38   0.002
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    27   3.2  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.5  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   9.7  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  127 bits (306), Expect = 2e-30
 Identities = 59/92 (64%), Positives = 70/92 (76%)
 Frame = -3

Query: 631 FREXRXLIVLDPAQDXQPITEASYVNIPVIALCNTDSPLRXVDIAIPCNTKSSHSIGLMW 452
           +RE R ++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W
Sbjct: 118 YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIW 177

Query: 451 WLLAREVLRLRGVLPRDQRWDVVVDLFFYREP 356
           +LLAREVLR+RG L R   WDV+ DL+FYR+P
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209



 Score = 33.5 bits (73), Expect = 0.036
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -2

Query: 695 GVTLIAGRFTPGXFTNQIQAAF 630
           G T IAGRFTPG FTN I   +
Sbjct: 97  GATAIAGRFTPGNFTNYITRTY 118


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  123 bits (297), Expect = 3e-29
 Identities = 58/92 (63%), Positives = 69/92 (75%)
 Frame = -3

Query: 631 FREXRXLIVLDPAQDXQPITEASYVNIPVIALCNTDSPLRXVDIAIPCNTKSSHSIGLMW 452
           +RE R +IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W
Sbjct: 119 YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAW 178

Query: 451 WLLAREVLRLRGVLPRDQRWDVVVDLFFYREP 356
           +LLAREVLRLRG + R   W+V+ DL+FYR+P
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210



 Score = 33.5 bits (73), Expect = 0.036
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -2

Query: 695 GVTLIAGRFTPGXFTNQIQAAF 630
           G T IAGRFTPG FTN I   +
Sbjct: 98  GATAIAGRFTPGNFTNYITRTY 119



 Score = 29.5 bits (63), Expect = 0.59
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 768 PXEVXXILXRPFGQRAVXNFXAQTRCYXYCGTF 670
           P +V  I  RP+G RAV  F A T      G F
Sbjct: 74  PADVCVISSRPYGHRAVLKFAAHTGATAIAGRF 106


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -3

Query: 613 LIVLDPAQDXQPITEASYVNIPVIALCNTDSPLRXVDIAIPCNTKSSHSIGLMWWLLAR 437
           +++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 183 MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 420 VVCFPVTSAGMLWLICSSTVNPEESEKD 337
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 574 TEASYVNIPVIALCNTDSPLRXVDIAIPCNTKSSHSI 464
           T A    +  + LC+ +S  R  D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,777
Number of Sequences: 5004
Number of extensions: 48137
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)