Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_N03
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873...    43   3e-04
01_01_1048 + 8272486-8272941                                           35   0.092
05_07_0161 + 28089538-28089856,28089921-28090021                       29   3.5  
06_03_1407 - 29954374-29954738,29955939-29958558                       28   8.0  
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119...    28   8.0  

>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
            19387454-19388884,19388953-19389118,19392035-19392114,
            19392393-19392462,19392550-19392761,19392837-19392890,
            19393471-19393623,19393715-19393930,19394029-19394248,
            19394332-19394399,19394510-19394643,19394755-19394854,
            19394943-19395421,19395506-19395699,19396270-19396355,
            19396364-19396444,19396842-19397023,19397305-19397346,
            19398247-19398558,19399374-19399434,19399435-19399617,
            19399744-19399863,19400380-19401051,19402597-19402668,
            19402742-19402865,19403563-19403651,19405023-19405097
          Length = 2170

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = -1

Query: 358  DAFRCRPPNTSRPPSLHVDDFTA 290
            D FR R PNTSRPPS+HVDD+ A
Sbjct: 1564 DTFRQRKPNTSRPPSMHVDDYVA 1586


>01_01_1048 + 8272486-8272941
          Length = 151

 Score = 34.7 bits (76), Expect = 0.092
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 385 CSRGRGEXPDAFRCRPPNTSRPPSLHVD 302
           C+RGRG    A+ CRPP     P L VD
Sbjct: 9   CARGRGAAAGAYCCRPPGDQAVPPLRVD 36


>05_07_0161 + 28089538-28089856,28089921-28090021
          Length = 139

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -1

Query: 208 VHAHYRHTRGRGAWEAGAPHFGHYPPAPQYMLGGACR--GPRGPRH 77
           V    R  RGRG WEAGA     +PP P   +       G  G RH
Sbjct: 95  VRRRMRQGRGRGGWEAGA-----HPPLPMARMPSRLEDGGDSGGRH 135


>06_03_1407 - 29954374-29954738,29955939-29958558
          Length = 994

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +2

Query: 593 SSPXGPXGMSNXXPVGXXXXWAGSPGXCXXRXXXXCPPXXSGXPG 727
           +S  GP  M     V     + G+PG C       CPP  +G  G
Sbjct: 590 NSLSGPVPMQGQFLVFNESSFVGNPGLCGGPVADACPPSMAGGGG 634


>03_03_0042 +
           14009649-14009866,14011342-14011419,14011791-14011955,
           14012071-14012138,14012219-14012258,14013579-14013690,
           14013859-14013942
          Length = 254

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 312 RLGGREVLGGRQRNASGXSPRPREHAHSP 398
           R  GR + G  +R +   SPR R H++SP
Sbjct: 152 RTSGRYMDGSHRRRSVSRSPRSRYHSYSP 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,716,205
Number of Sequences: 37544
Number of extensions: 271735
Number of successful extensions: 768
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)