Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_N01
         (1190 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938     33   0.58 
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    30   3.1  
10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266     29   7.2  

>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
          Length = 331

 Score = 32.7 bits (71), Expect = 0.58
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +2

Query: 785 GGXXXXFFFFFFXXKKKXXXXFFFFFFFF 871
           G     FFFFFF         FFFFFFFF
Sbjct: 57  GSKEDFFFFFFFFFFFFFFFFFFFFFFFF 85



 Score = 31.9 bits (69), Expect = 1.0
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +2

Query: 803 FFFFFFXXKKKXXXXFFFFFFFF 871
           FFFFFF         FFFFFFFF
Sbjct: 64  FFFFFFFFFFFFFFFFFFFFFFF 86



 Score = 30.7 bits (66), Expect = 2.4
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +3

Query: 768 PXXGXGGGXXXXFFFFFFXXKKKXXXXFFFFFFF 869
           P     G     FFFFFF         FFFFFFF
Sbjct: 51  PRVATVGSKEDFFFFFFFFFFFFFFFFFFFFFFF 84


>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 805 FFFFFFXXKKXXXXXFFFFFFF 870
           FFFFFF         FFFFFFF
Sbjct: 87  FFFFFFFFFFFFFFFFFFFFFF 108



 Score = 29.9 bits (64), Expect = 4.1
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = +2

Query: 788 GXXXXFFFFFFXXKKKXXXXFFFFFFFF 871
           G    FFFFFF         FFFFFFFF
Sbjct: 84  GYAFFFFFFFFFF----FFFFFFFFFFF 107



 Score = 29.5 bits (63), Expect = 5.4
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 803 FFFFFFXXKKKXXXXFFFFFFF 868
           FFFFFF         FFFFFFF
Sbjct: 87  FFFFFFFFFFFFFFFFFFFFFF 108


>10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266
          Length = 60

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 16/30 (53%), Positives = 16/30 (53%)
 Frame = -2

Query: 892 GGXXXXXKKKKKKKKXXXXFFFXXKKKKKK 803
           GG     KKKKKKKK         KKKKKK
Sbjct: 21  GGLRGLPKKKKKKKKKKKKKKKKKKKKKKK 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,308,425
Number of Sequences: 37544
Number of extensions: 193817
Number of successful extensions: 704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3631571424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)