Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_M21
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   3.1  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    27   3.1  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    27   3.1  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    26   5.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   7.1  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   7.1  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   9.4  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    25   9.4  

>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 476 KQANKKASKFPWGRKIDTSEVVVTCKIRRPVRS 574
           K  N+ + +FP+  KI       TCK  +P RS
Sbjct: 139 KNWNEASRRFPYDYKIFFPNKCSTCKFEKPARS 171


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -2

Query: 345 STSPKTRHLGSS*STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGS 166
           +T+P  R +  + STN      K  S      SL   G+   +    + L  + D L   
Sbjct: 235 TTNPLIRKVSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFEDADLEKAADALMAC 294

Query: 165 RFRSGGRFC 139
           +FR  G+ C
Sbjct: 295 KFRGSGQTC 303


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 261 SSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLL 121
           SS+ +L T+ +TS+    H   +     L+G+     GRFC A  L+
Sbjct: 134 SSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 690 VTXTLRSQPRTLVKHAQARTSPXNLHPP 607
           +T   ++Q +T  KH    TS  ++HPP
Sbjct: 188 ITDQQKTQAKTKTKHIALTTSGMSVHPP 215


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 332 KHVISDPPDPLTVLLGTSSTGH 267
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 630 SPXNLHPPAEPEXXRIARHERTGRLILQVTTTSD 529
           S  +L PP +    R    E+TG L  Q T+TS+
Sbjct: 74  SNLSLRPPEDDLDSRSIESEQTGTLSKQTTSTSE 107


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 708  DPVNXXLGWWLVKLL 752
            DPVN    WW VK+L
Sbjct: 1342 DPVNYSKNWWNVKIL 1356


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 427 IKRHDT-RTLSSWPPVTTFPILRTEWKAVDV 338
           I R DT + + S PPVT    ++  WKA+D+
Sbjct: 47  IIRSDTIQLVISCPPVTYSDEIQVPWKAIDL 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,054
Number of Sequences: 5004
Number of extensions: 54390
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)