Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_M19
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    94   2e-20
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    91   1e-19
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    34   0.021
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.5  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.3  
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    25   9.7  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 59/147 (40%), Positives = 79/147 (53%), Gaps = 6/147 (4%)
 Frame = -1

Query: 757 ILSRPFGQRXLXKFAXHTGXTXIXXRFTPGVFXNQIQAAXP*TSFX*LYWTLHKTINPLL 578
           I SRP+G R + KFA HTG T I  RFTPG F N I           +  T  +     +
Sbjct: 80  ISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRL--IIVTDPRADAQAI 137

Query: 577 KLHMSTFL*LLCATQTPH*DLWTLLSHATPNLP------HSIGLMWWLLAREVLRLRGVL 416
           K      + ++    T      ++L+H    +P       SIGL W+LLAREVLRLRG +
Sbjct: 138 KEASFVNIPVIALCDTD-----SILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNI 192

Query: 415 PRDQRWDVVVDLFFYRDPEESEKDEQQ 335
            R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 193 SRTTAWEVMPDLYFYRDPEEIEREEEQ 219



 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 33/55 (60%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
 Frame = -3

Query: 620 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNT---KSSPLYWF 465
           +IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N    KS  L W+
Sbjct: 125 IIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWY 179


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 57/149 (38%), Positives = 79/149 (53%), Gaps = 6/149 (4%)
 Frame = -1

Query: 757 ILSRPFGQRXLXKFAXHTGXTXIXXRFTPGVFXNQIQAAXP*TSFX*LYWTLHKTINPLL 578
           + +R +G R + KFA HTG T I  RFTPG F N I           +  T  +     +
Sbjct: 79  VSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRL--IVVTDPRADAQAI 136

Query: 577 KLHMSTFL*LLCATQTPH*DLWTLLSHATPNLP------HSIGLMWWLLAREVLRLRGVL 416
           K      + ++    T      ++L+H    +P       SIGL+W+LLAREVLR+RG L
Sbjct: 137 KEASFVNIPVIALCDTD-----SILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTL 191

Query: 415 PRDQRWDVVVDLFFYRDPEESEKDEQQAK 329
            R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 192 SRSAPWDVMPDLYFYRDPEEVEREEEAKK 220



 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 41/78 (52%), Positives = 48/78 (61%), Gaps = 8/78 (10%)
 Frame = -3

Query: 620 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNT---KSSPLYWF----D 462
           ++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N    KS  L W+    +
Sbjct: 124 IVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLARE 183

Query: 461 VV-VVGT*SVEASWCASP 411
           V+ V GT S  A W   P
Sbjct: 184 VLRVRGTLSRSAPWDVMP 201


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 34.3 bits (75), Expect = 0.021
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 620 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKS 483
           +++L+P ++     EA   ++P I + +TD+  R V   IP N  S
Sbjct: 183 MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDS 228


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 472 IGLMWWLLAREVLRLRGVLPRDQRWD 395
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 417 FPVTSAGML--WLICSSTVTLKKVKRM 343
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 485 IWCCMG*QCPQILVG 529
           IWCC G  C ++L G
Sbjct: 54  IWCCNGKGCKKVLAG 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,664
Number of Sequences: 5004
Number of extensions: 51512
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)