Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_M19
         (814 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    96   3e-20
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    92   6e-19
06_03_0871 - 25562767-25563509,25563889-25565776                       31   0.82 
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.3  
06_03_0543 + 21967787-21970261                                         29   5.8  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.7  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 58/147 (39%), Positives = 84/147 (57%), Gaps = 4/147 (2%)
 Frame = -1

Query: 751 SRPFGQRXLXKFAXHTGXTXIXXRFTPGVFXNQIQAAXP*TSFX*LY--WTLHKTINPLL 578
           +RP+GQR + KFA +TG   I  R TPG F NQ+Q +        L    T H+ I    
Sbjct: 83  ARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESA 142

Query: 577 KLHMSTFL*LLCATQTP--H*DLWTLLSHATPNLPHSIGLMWWLLAREVLRLRGVLPRDQ 404
             ++ T     C T +P  + D+    ++   N   SIG ++WLLAR VL++RG +    
Sbjct: 143 LGNIPTIA--FCDTDSPMRYVDIGIPANNKGRN---SIGCLFWLLARMVLQMRGTILPGH 197

Query: 403 RWDVVVDLFFYRDPEESEKDEQQAKEQ 323
           +WDV+VDLFFYRDPEE+++ E++A  Q
Sbjct: 198 KWDVMVDLFFYRDPEEAKEQEEEAPAQ 224



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 28/45 (62%), Positives = 34/45 (75%)
 Frame = -3

Query: 620 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 486
           LI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K
Sbjct: 126 LILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNK 170


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 91.9 bits (218), Expect = 6e-19
 Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 2/141 (1%)
 Frame = -1

Query: 751 SRPFGQRXLXKFAXHTGXTXIXXRFTPGVFXNQIQAAXP*TSFX*LY--WTLHKTINPLL 578
           +RP+GQR + KFA +TG   I  R TPG F NQ+Q +        L    T H+ I    
Sbjct: 83  ARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESA 142

Query: 577 KLHMSTFL*LLCATQTPH*DLWTLLSHATPNLPHSIGLMWWLLAREVLRLRGVLPRDQRW 398
             ++ T     C T +P   +  +   A      SIG ++WLLAR VL++RG +    +W
Sbjct: 143 LGNIPTIA--FCDTDSPMRYV-DIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKW 199

Query: 397 DVVVDLFFYRDPEESEKDEQQ 335
           DV+VDLFFYRDPEE+++ E++
Sbjct: 200 DVMVDLFFYRDPEEAKEQEEE 220



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 28/45 (62%), Positives = 34/45 (75%)
 Frame = -3

Query: 620 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 486
           LI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K
Sbjct: 126 LILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNK 170


>06_03_0871 - 25562767-25563509,25563889-25565776
          Length = 876

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +1

Query: 370 GRRTNQPQHPSAGHGEAHHEASTL-HVPTTTTSNQ*SGE---DLVLHGIAMSTNLSGESV 537
           GR T  PQH S  H   HH+A+     P T  +    GE   + +L   A     +G S+
Sbjct: 497 GRST--PQHHSKKHDHPHHQAAAAPPAPATLVTVDGDGELEMETLLKASAYILGATGSSI 554

Query: 538 LHKAI 552
           ++KA+
Sbjct: 555 VYKAV 559


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 215 TRCSSCFWSTPCSRRMVCPGTR*VEHN 135
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 466 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 377
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 215 TRCSSCFWSTPCSRRMVCPGTR*VEHN 135
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,027,240
Number of Sequences: 37544
Number of extensions: 365943
Number of successful extensions: 924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)