Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_M19
         (814 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    80   2e-15
Z68315-6|CAA92671.1|  219|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    29   3.0  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   9.1  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   9.1  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 53/149 (35%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
 Frame = -1

Query: 757 ILSRPFGQRXLXKFAXHTGXTXIXXRFTPGVFXNQIQAAXP*TSFX*LYWTL--HKTINP 584
           + +RP+ QR L KFA HTG T I  RF+PG   NQIQ          +      H+ +  
Sbjct: 77  VSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPRLLVISDPRIDHQAVTE 136

Query: 583 LLKLHMSTFL*LLCATQTPH*DLWTLLSHATPNLPHSIGLMWWLLAREVLRLRGVLPRDQ 404
              + +         T++P   L  +          SIGLMWW+LARE+L LRG + R  
Sbjct: 137 ASYVGVPVIS--FVNTESPL-KLIDIGVPCNNKGERSIGLMWWMLAREILILRGKISRQT 193

Query: 403 RW-----DVVVDLFFYRDPEESEKDEQQA 332
            +     +++ DL+FYRDP E+EK+E  A
Sbjct: 194 GFVLEGKEIMPDLYFYRDPTETEKEETGA 222



 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 26/45 (57%), Positives = 35/45 (77%)
 Frame = -3

Query: 620 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 486
           L++ DP  DHQ +TEASYV +PVI+  NT+SPL+ +DI +PCN K
Sbjct: 122 LVISDPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNK 166


>Z68315-6|CAA92671.1|  219|Caenorhabditis elegans Hypothetical
           protein F28C6.5 protein.
          Length = 219

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 379 TNQPQHPSAGHGEAHHEASTLHVPTTTTSNQ*SGED 486
           T +P++P A   E + +  T+H PT  ++++  GED
Sbjct: 128 TKKPENPFADVVETNEQLDTVHWPTAVSTSEIEGED 163


>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 221 CCTRCSSCFWSTPCSRRMVCP 159
           CCT    CF ST CS   VCP
Sbjct: 53  CCTN-EECFMSTECSYSAVCP 72


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +1

Query: 172  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 267
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +1

Query: 172  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 267
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,704,619
Number of Sequences: 27780
Number of extensions: 307976
Number of successful extensions: 904
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)