Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_M15
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0081 + 20745627-20748144,20748211-20748308 31 1.6
08_01_0193 + 1599970-1600503,1601488-1601919,1602010-1602147,160... 30 2.1
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 30 2.7
03_01_0515 - 3864796-3865425 30 2.7
09_02_0082 - 4060018-4061604 29 3.6
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 29 4.8
12_02_1174 - 26696869-26698191 29 6.3
03_05_0543 - 25404630-25405408,25405461-25405605 29 6.3
02_04_0413 + 22681957-22682035,22682253-22682788 29 6.3
01_01_0070 - 542603-542686,542803-543441 29 6.3
07_01_0862 - 7172083-7172931 28 8.3
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 28 8.3
04_01_0034 - 401208-402923 28 8.3
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 521 PPPXPPLXHXTTPXPXXXTPPL-ADPARAP 435
P P PP+ +P P TPP+ A PA AP
Sbjct: 515 PAPAPPVSTLPSPAPSVHTPPVTAPPATAP 544
>08_01_0193 +
1599970-1600503,1601488-1601919,1602010-1602147,
1602532-1602600
Length = 390
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 521 PPPXPPLXHXTTPXPXXXTPPLADPARAPXGVGA 420
PPP PPL +P P ++ P P G GA
Sbjct: 23 PPPPPPLPPRGSPAPSENHTAISAPLLQPAGAGA 56
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 521 PPPXPPLXHXTTPXPXXXTPPLADPARAPXGVGAXXRP 408
PPP P + TTP P PP +P P RP
Sbjct: 334 PPPPPSRFNNTTPKPPPPPPP-PEPPTGPVSARRLLRP 370
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 521 PPPXPPLXHXTTPXPXXXTPPLADPARAP 435
PPP PP ++P P PP PA +P
Sbjct: 71 PPPPPPPSVTSSPPPPPLPPPPPPPAASP 99
>09_02_0082 - 4060018-4061604
Length = 528
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 521 PPPXPPLXHXTTPXPXXXTPPL-ADPARAPXG 429
P P PP+ TP TPP+ A PA P G
Sbjct: 338 PAPAPPVATPPTPATPVPTPPMTAPPADVPLG 369
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -2
Query: 521 PPPXPPLXHXTTPXPXXXTPPL-ADPARAP 435
P P PP+ + P P PP+ A PA AP
Sbjct: 423 PAPAPPVPTPSMPSPTVPAPPVTAAPATAP 452
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -2
Query: 515 PXPPLXHXTTPXPXXXTPP-LADPARAPXG 429
P PP+ P P TPP LA PA P G
Sbjct: 364 PAPPVPAPPAPTPPIPTPPALAPPADVPPG 393
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = -2
Query: 524 QPPPXPPLXHXTTPXPXXXTPPLADPARAPXGVGAXXRPR 405
QP P PP T P P PP P R P A P+
Sbjct: 207 QPKPQPP---PTLPPPSPPPPPPTVPPRTPGDTPAVVEPK 243
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = -2
Query: 539 TXXXXQPPPXPPLXHXTTPXPXXXTPPLADPARAPXGVGAXXRP 408
T QPP P P P TPP + P RAP A P
Sbjct: 127 TPPPQQPPQPEPRRPPAAPLPGVRTPP-SPPRRAPAPAPAPLTP 169
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 521 PPPXPPLXHXTTPXPXXXTPPLAD 450
PPP PP H P P PP ++
Sbjct: 158 PPPSPPCQHECPPTPPCEHPPCSE 181
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = -2
Query: 521 PPPXPPLXHXTTPXPXXXTPPLADPARAPXGVGAXXRPRAVCXA 390
PP PP P PP+A PA AP + P V A
Sbjct: 108 PPVSPPPATPPPALPPSTPPPVAAPAEAPAALPPATTPPPVAEA 151
>07_01_0862 - 7172083-7172931
Length = 282
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Frame = -2
Query: 521 PPPXPPLXHX-TTPXPXXXTPPLADPARAPXGVGA 420
PPP PPL TP P PP P P A
Sbjct: 188 PPPQPPLPEKENTPLPPLLLPPKKKPLPPPSPTAA 222
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 518 PPXPPLXHXTTPXPXXXTPPLADPARAPXGVGAXXRP 408
PP PP TP P P P R P V A P
Sbjct: 128 PPPPPPPPARTPMPTPTPTPTPTPTRPPVPVWAAPLP 164
>04_01_0034 - 401208-402923
Length = 571
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Frame = -2
Query: 521 PPPXPPLXHXTTPX-PXXXTPPLADPARAPXGVGAXXRP 408
PPP PP P P PPL P RA RP
Sbjct: 307 PPPPPPQQQRAKPSRPPPPPPPLDPPPRAAAPPAKCKRP 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,577,318
Number of Sequences: 37544
Number of extensions: 192437
Number of successful extensions: 1457
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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