Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_M15
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 31 1.4
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 31 1.4
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 31 1.4
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 2.4
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 29 3.2
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 3.2
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 4.3
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 4.3
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 5.6
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 9.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 9.8
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -2
Query: 521 PPPXPPLXHXTTPXPXXXTPPLADPARAPXGVGA 420
PPP PP P P PPL P + P G A
Sbjct: 965 PPPVPP--REAPPIPKRNPPPLGAPPKVPEGARA 996
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -2
Query: 521 PPPXPPLXHXTTPXPXXXTPPLADPARAPXGVGA 420
PPP PP P P PPL P + P G A
Sbjct: 965 PPPVPP--REAPPIPKRNPPPLGAPPKVPEGARA 996
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -2
Query: 521 PPPXPPLXHXTTPXPXXXTPPLADPARAPXGVGA 420
PPP PP P P PPL P + P G A
Sbjct: 965 PPPVPP--REAPPIPKRNPPPLGAPPKVPEGARA 996
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 524 QPPPXPPLXHXTTPXPXXXTPPLA 453
QPPP PP H P P PP A
Sbjct: 131 QPPPPPPPPHYPPPPPHYPPPPPA 154
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Frame = -2
Query: 518 PPXPPLXHXTTPXPXXXTPPLADPARAPXG----VGAXXRPRAVCXAG---XXCDAGAPC 360
PP PP P P PP P AP G+ R C +G C G PC
Sbjct: 125 PPNPPRTCCPPPTPAAPPPPPPPPPPAPEAPTQCCGSQPYGRTPCRSGCPNGDCGCGRPC 184
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 521 PPPXPPLXHXTTPXPXXXTPPLADPARAPXGV 426
PPP PP TP P PP ++AP GV
Sbjct: 1342 PPPPPPPSDDLTPVPPPPPPP-PTMSKAPTGV 1372
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 518 PPXPPLXHXTTPXPXXXTPPLADPARAPXGV 426
PP PP P P +PP PA P G+
Sbjct: 91 PPPPPPKPTIRPPPIPASPPPRPPASEPVGI 121
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 518 PPXPPLXHXTTPXPXXXTPPLADPARAPXGV 426
PP PP P P +PP PA P G+
Sbjct: 313 PPPPPPKPTIRPPPIPASPPPRPPASEPVGI 343
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -2
Query: 521 PPPXPPLXHXTTPXPXXXTPPLADPARAPXGVGAXXRP 408
PPP PPL P PP P AP GA P
Sbjct: 503 PPPPPPLL-GIAPMSTNAPPPPPMPGMAPLSTGAPTPP 539
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical protein
F54D11.2 protein.
Length = 1145
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = -2
Query: 524 QPPPXPPLXHXTTPX--PXXXTPPLADPARAP 435
+PPP PPL P P PPL PA P
Sbjct: 1101 RPPPPPPLPILQNPVATPMSQQPPLPSPAPPP 1132
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = -2
Query: 521 PPPXPPLXHXTTPXPXXXTPPLADPAR-APXGVGAXXRP 408
PPP PP P PP P+R P G+G P
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPP 336
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = -2
Query: 521 PPPXPPLXHXTTPXPXXXTPPLADPAR-APXGVGAXXRP 408
PPP PP P PP P+R P G+G P
Sbjct: 308 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPP 346
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,308,191
Number of Sequences: 27780
Number of extensions: 122809
Number of successful extensions: 551
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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