Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_M14
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 132 6e-32
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 132 8e-32
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.4
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 28 1.4
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 28 1.4
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 28 1.8
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 27 3.2
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 4.2
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 25 9.7
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 132 bits (319), Expect = 6e-32
Identities = 76/182 (41%), Positives = 107/182 (58%), Gaps = 2/182 (1%)
Frame = -3
Query: 815 AWXDILKXYKXQXFRAGXG*MXTRRXIQXKGPLHNFQQGSGFDSRXPQHPRCGAPEC*PK 636
A+ D++K + RAG G + RR +Q +GPL F + +G P +
Sbjct: 176 AYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNV-RR 234
Query: 635 XXLLKLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLK 456
LL+LAPGGHLGRFVIWT+SAFG LD +FGS ++ KKN+ LP+ ++N D+TRL+
Sbjct: 235 LNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLIN 294
Query: 455 SDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKAL 282
SDEI+ +++A RV RA +K NPL N + +LNPYA KA ++L K KA
Sbjct: 295 SDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAY--KANVKLNTGKTPKAA 352
Query: 281 AD 276
+
Sbjct: 353 GE 354
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 132 bits (318), Expect = 8e-32
Identities = 75/182 (41%), Positives = 107/182 (58%), Gaps = 2/182 (1%)
Frame = -3
Query: 815 AWXDILKXYKXQXFRAGXG*MXTRRXIQXKGPLHNFQQGSGFDSRXPQHPRCGAPEC*PK 636
A+ D++K + RAG G + RR +Q +GPL F + +G P +
Sbjct: 176 AYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNV-RR 234
Query: 635 XXLLKLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLK 456
LL+LAPGGHLGRFVIWT+SAFG LD +FGS ++ KKN+ LP+ ++N D+TRL+
Sbjct: 235 LNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLIN 294
Query: 455 SDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKAL 282
SDEI+ +++A RV RA +K NPL N + +LNPYA KA +++ K KA
Sbjct: 295 SDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAY--KANVKINSEKTPKAA 352
Query: 281 AD 276
+
Sbjct: 353 GE 354
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 1.4
Identities = 27/109 (24%), Positives = 46/109 (42%)
Frame = -3
Query: 524 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 345
KQK + + Q K LT+ S E + VL +R T+K LTN+ ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787
Query: 344 AAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 198
+ ++ + + L ++ L+KRN K + RK
Sbjct: 788 PQITVKQNTTKSSSAPRMGMLEQLKQE--YLTKRNFESKLKSSAVSSRK 834
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +3
Query: 342 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 503
+V +EF+ RL IG+RV+ AF+GS E + L+ + +T + ++ L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = -3
Query: 458 KSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA-- 285
+S + + +K+ IR R+L+P ++ + N Y+ + + ++ R R
Sbjct: 659 RSRSVTPINNINHKKYIRKDRELSPRGRERSSNR-NSYSDLSRSSSLSRGRSRSYTPEGR 717
Query: 284 LADAEKSGLKLSKRNPAMKAEKLRERRRKN 195
L ++E G + +PA + + R+R R++
Sbjct: 718 LIESEDKGYRSRSSSPASRKYRSRQRYRRS 747
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 601 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 467
+D+ S+ LS H+ T +S R H ST PSQ + + SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 596 VQDDLPEPASGGSXLVNIQELHTGDVAEXASQTLILVENYEGXPYXGY 739
V DDL E + S LVN+QE H ++ + L + + EG + Y
Sbjct: 208 VADDLSERSHSYSSLVNLQEGH--NLTKRHEVALFMPSSAEGEEFLSY 253
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 595 VSSSGLSPHSAGLTPYSGHGRHHRNK 518
VS S HS P+S GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 9.7
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = -3
Query: 476 DLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAM-LKLNPYAAVLKRKAILELRRR 300
++T LK DE+RK+ N + L + +++ + L+ + K + +EL
Sbjct: 366 EVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDKDEILTKTQVWMEL--- 422
Query: 299 KNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 201
N LA+ E LKL + + R+RRR
Sbjct: 423 -NKDYLAEEEAKNLKLQEDLKKGIVRQPRKRRR 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,793
Number of Sequences: 5004
Number of extensions: 47181
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -