Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_M14
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 140 2e-33
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 136 1e-32
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 31 1.4
11_01_0205 + 1617044-1617197,1617845-1618233 30 2.5
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 2.5
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878... 29 3.3
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 29 4.4
02_04_0073 - 19471254-19472681 29 4.4
03_03_0125 - 14630078-14630136,14630197-14631160 28 7.7
03_03_0122 - 14617879-14618871 28 7.7
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 140 bits (338), Expect = 2e-33
Identities = 80/188 (42%), Positives = 109/188 (57%), Gaps = 2/188 (1%)
Frame = -3
Query: 815 AWXDILKXYKXQXFRAGXG*MXTRRXIQXKGPLHNF-QQGSGFDSRXPQHPRCGAPEC*P 639
A+ D K R G G M RR I KGPL + +GS P
Sbjct: 180 AYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANV-E 238
Query: 638 KXXLLKLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLL 459
+ LL LAPGGHLGRFVIWT+SAF +L+ ++G+++ PS +KK F LP+PKMAN DL R++
Sbjct: 239 RLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRII 298
Query: 458 KSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKAL 282
SDE++ V++ NK V R ++ NPL N A+LKLNPY ++ A L E R K K
Sbjct: 299 NSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEK 358
Query: 281 ADAEKSGL 258
D++++ L
Sbjct: 359 LDSKRTKL 366
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 136 bits (330), Expect = 1e-32
Identities = 82/201 (40%), Positives = 110/201 (54%), Gaps = 2/201 (0%)
Frame = -3
Query: 815 AWXDILKXYKXQXFRAGXG*MXTRRXIQXKGPLHNF-QQGSGFDSRXPQHPRCGAPEC*P 639
A+ D K RAG G M RR I KGPL + +GS P
Sbjct: 179 AYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANV-E 237
Query: 638 KXXLLKLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLL 459
+ LL LAPGGHLGRFVIWT+ AF +LD ++G + TP+ +KK F LP+PKMAN DL+RL+
Sbjct: 238 RLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLI 297
Query: 458 KSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKAL 282
SDE++ V++ NK V + NPL N A+LKLNPY ++ A L E R K
Sbjct: 298 NSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEK 357
Query: 281 ADAEKSGLKLSKRNPAMKAEK 219
D++++ L + + A K
Sbjct: 358 LDSKRTKLSPEESSKIKAAGK 378
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -1
Query: 622 SWLREVILDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQ--RWPTLTSHVFSSLM 449
S+LR + LD+SSS +P S+ H HH+ + S WP S ++
Sbjct: 379 SFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLPEWPPRLQPEPSPML 438
Query: 448 RSGRSSVLPTNA 413
SG LP +A
Sbjct: 439 SSGLGLGLPYDA 450
>11_01_0205 + 1617044-1617197,1617845-1618233
Length = 180
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 351 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 440
++ HRLV G+ +F +H FV S ++L
Sbjct: 35 LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 617 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 477
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>09_02_0570 +
10786779-10787144,10787353-10787547,10787647-10787826,
10787925-10788119,10789629-10789727,10789822-10790328,
10790438-10790779
Length = 627
Score = 29.5 bits (63), Expect = 3.3
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Frame = -3
Query: 536 KTPSKQKKNFNLPQPKMANTDLTR---LLKSDEIRKVLRAPNKRVIRATR-KLNPLTNNK 369
K P+KQ K PQ +++ D +R + K + + L A + + + K P +
Sbjct: 409 KMPAKQAKEAPAPQAEVSPKDESRVKAIAKPSKAKSSLDADDDYEAESPKEKPKPKEVDV 468
Query: 368 AMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 201
A LK +++ L L R+K L A+ + + +K E++R RRR
Sbjct: 469 AKLKEIKRQEEMEKNR-LALERKKKLAEKQAAKAAARAQKEAEKKLKREEMRARRR 523
>09_04_0151 -
15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 29.1 bits (62), Expect = 4.4
Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Frame = -3
Query: 626 LKLAPGGHLGRFVIWTQSAFGRL-DPLFGSW-KTPSKQKKNFNLPQPKMANTDLTRLLKS 453
++L G H+ + ++ + +L + + G P + K + QP + T ++ +
Sbjct: 244 VRLKEGSHINKSLMTLGTVIKKLSEGIEGQGGHVPYRDSKLTRILQPALGGNANTAIICN 303
Query: 452 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLK--RKAILELRRRKNLKALA 279
+ +V K ++ + +TN + ++ AA+LK RK I ELR + L++
Sbjct: 304 ITLAQVHADETKSSLQFASRALRVTNCACVNEILTDAALLKRQRKEIEELRAK--LRSEL 361
Query: 278 DAEKSGLKLSKRNPAMKAEKLRERR 204
+ E+ L+L + KA++ R++R
Sbjct: 362 EKERISLELEEEK---KAKEQRDKR 383
>02_04_0073 - 19471254-19472681
Length = 475
Score = 29.1 bits (62), Expect = 4.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 577 SPHSAGLTPYSGHGRHHRNKR 515
+P G +P S HG HHR+++
Sbjct: 20 APRPRGASPLSSHGHHHRSRK 40
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -3
Query: 659 GAPEC*PKXXLLKLAPGGHLGRFVIWTQSAFGRL-DPLFGSWK 534
G P L PG G FV+W AFG L L G+WK
Sbjct: 109 GVPVSLVTAELAAALPGN--GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -3
Query: 659 GAPEC*PKXXLLKLAPGGHLGRFVIWTQSAFGRL-DPLFGSWK 534
G P L PG G FV+W AFG L L G+WK
Sbjct: 106 GVPVSLVTAELAAALPGN--GGFVVWADRAFGPLAGSLLGTWK 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,130,599
Number of Sequences: 37544
Number of extensions: 375733
Number of successful extensions: 960
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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