Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_M13
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    30   2.7  
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417...    29   6.2  
04_04_1125 + 31085106-31085714                                         28   8.2  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +2

Query: 713 LPLPXPXAXXXXXPXPPPXXXSXXXXVSXPRPPLP 817
           LP P P A     P PPP   S       P PP P
Sbjct: 534 LPSPSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPP 568


>12_01_0526 -
           4171313-4171417,4171514-4171597,4171688-4171758,
           4171814-4171891,4174482-4174569,4174659-4174850,
           4174939-4175802
          Length = 493

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +2

Query: 716 PLPXPXAXXXXXPXPPPXXXSXXXXVSXPRPPLP 817
           P P P       P PPP        VS P PP P
Sbjct: 148 PPPPPPQESTPPPPPPPPPAPVAAAVSAPAPPSP 181


>04_04_1125 + 31085106-31085714
          Length = 202

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 615 PCXPPPXXPGPXPXXTPXXPF 677
           PC PPP  P P    TP  P+
Sbjct: 43  PCQPPPPTPTPATPTTPPTPW 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,854,478
Number of Sequences: 37544
Number of extensions: 186695
Number of successful extensions: 1264
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)