Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_M10
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 33 0.20
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 31 1.4
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 31 1.4
12_02_1174 - 26696869-26698191 29 3.2
01_05_0014 - 17162664-17163500 29 3.2
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.2
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726... 29 4.2
06_03_0743 + 24069752-24070483,24071890-24072345 29 5.6
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.6
02_04_0192 + 20795659-20796309 29 5.6
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.7
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = -1
Query: 700 SXTSTRSSNPRFHTPTTPRLNIHFHQSPDAVLEGVRAGVKASVVIRGSISVSHP 539
S T+TR S PR H PTTP ++ +S + L RA +V+ G+ + HP
Sbjct: 4 SSTATRLSPPRLHAPTTPSPHLPLRRSRFSPL---RAAKLEAVLTIGTHLIPHP 54
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/79 (29%), Positives = 30/79 (37%)
Frame = -2
Query: 732 PLCIKPPSLXFRXHQPDHQIPDSIHQPPPDLTSISINPLTPY*KEFAPGLKPPLSSEAPS 553
P +PP R P P + PPP SIS P P AP P + + PS
Sbjct: 76 PPAPRPPRRHHRIPPPP---PPLLPTPPPPPASISPTPAPPLPPPPAPAPPPTPTPKFPS 132
Query: 552 AYLTPSSLGMXKGVSPPYF 496
+ PS + P+F
Sbjct: 133 SSANPSPPDAYPFTNYPFF 151
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 765 PPLSFA*YGGXPLCIKPPSLXF-RXHQPDHQIPDSIHQPPPDLTSISINPLTP 610
P S G P+ ++PPS+ R P+ P QPP + + + NP P
Sbjct: 352 PSASSPTLGSSPVHLRPPSIPQPRGRAPNPSPPKRRPQPPEPMAAHAWNPFVP 404
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = -2
Query: 738 GXPLCIKPPSLXFRXHQPDHQIPDSIHQPPPDLTSISINPLTPY*KEFAPGLKPPLSSEA 559
G P PP ++ H P + +P S+ PPP S + P P PP S
Sbjct: 45 GPPSQPPPPQAMYQAH-PQYPMPGSLPPPPPRPPSFAPENALPPSSPPPPSPPPPPPSSP 103
Query: 558 PSAYLTPSS 532
P +P++
Sbjct: 104 PPVPPSPTA 112
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.5 bits (63), Expect = 3.2
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Frame = -2
Query: 720 KPPSLXFRXHQPDHQIPDSIHQP----PPDLTSISINPLTPY*KEFAPGLKPPLSSEAPS 553
+PPS+ QP Q P S+ P PP S+ P K P PP S P
Sbjct: 166 RPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPP 225
Query: 552 AYLTPSSLGMXKGVSPP 502
+ P + G V P
Sbjct: 226 PTVPPRTPGDTPAVVEP 242
>01_05_0014 - 17162664-17163500
Length = 278
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = -2
Query: 690 QPDHQIPDSIH-QPPPDLTSISINPLTPY*--KEFAPG--LKPPLSSEAPSAYLTPSSLG 526
QP +P S+ PP + + NP P+ + +P +K + ++P+ TP LG
Sbjct: 47 QPLATVPGSLQIWSPPASSLVRPNPPRPHSAARSLSPRHVIKTKIRGDSPARQPTPGELG 106
Query: 525 MXKGVSPP 502
+ K PP
Sbjct: 107 LLKAAPPP 114
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 92 RLQRSRKKHGEDLLTGGRSRRKGEKLE*MQREEQ 193
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>07_01_0874 -
7261191-7261274,7262291-7262440,7262769-7262916,
7263136-7263259,7263452-7263653,7263743-7263848,
7263979-7264442
Length = 425
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 664 HTPTTPRLNIHFHQSPDAVLEGVRAGVKASVVIRGSISVSHPLVTGHG 521
H+PT RL++ F PD L A KA + +VS P G G
Sbjct: 25 HSPTRRRLSLVFSGPPDGALSVAAAEEKADAGEEAAAAVSAPRGGGGG 72
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = -2
Query: 699 RXHQPDHQIPDSIHQPPPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSS 532
R H P H P PPP S S + Y P PP+ P LTPS+
Sbjct: 17 RSHHPLHFPPPPPPPPPPYAASFS-GLYSSYLHPPPPPSSPPIREALPLLSLTPST 71
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 251 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 72
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 71 ILHSF 57
+LHSF
Sbjct: 1408 LLHSF 1412
>02_04_0192 + 20795659-20796309
Length = 216
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 213 GS*GQQNCSSLCIYSSFSPFLRDLPPVSRSSPCFFRLLWS-LRKILIPYS 67
G G + S SS SPF+ LPP + SP F R L S LR +P+S
Sbjct: 33 GGGGSSSSFSSTNSSSSSPFVSFLPPPTSPSP-FHRFLPSPLRASSVPFS 81
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 452 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 363
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,812,142
Number of Sequences: 37544
Number of extensions: 467022
Number of successful extensions: 1326
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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