Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_M10
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    32   0.54 
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    32   0.54 
Z75714-2|CAB00059.1|  474|Caenorhabditis elegans Hypothetical pr...    31   0.71 
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    31   1.2  

>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = -2

Query: 732  PLCIKPPSLXFRXHQPDHQIPDSIHQPPPDLTSISI--NPLTPY*KEFAPGLKPPLSSEA 559
            P  +KPP +      P   IP  I  PPP    I    NP+           + P+++EA
Sbjct: 1157 PNLVKPPPVQVVAPSPS-VIPPPILPPPPPAGVIGQQRNPI-------GGARQVPVAAEA 1208

Query: 558  PSAYLTPSSLGMXKGVSPP 502
            P+A   PS   + +G SPP
Sbjct: 1209 PAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = -2

Query: 732  PLCIKPPSLXFRXHQPDHQIPDSIHQPPPDLTSISI--NPLTPY*KEFAPGLKPPLSSEA 559
            P  +KPP +      P   IP  I  PPP    I    NP+           + P+++EA
Sbjct: 1157 PNLVKPPPVQVVAPSPS-VIPPPILPPPPPAGVIGQQRNPI-------GGARQVPVAAEA 1208

Query: 558  PSAYLTPSSLGMXKGVSPP 502
            P+A   PS   + +G SPP
Sbjct: 1209 PAAAAAPSRARVPRGPSPP 1227


>Z75714-2|CAB00059.1|  474|Caenorhabditis elegans Hypothetical
           protein ZC434.3 protein.
          Length = 474

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 717 PPSLXFRXHQPDHQIPDSIHQPPPDLTSISINPLTPY*KEFAPGL 583
           P    F+  Q D+ +P   +QP P   + S++PL P+  +++ GL
Sbjct: 35  PNPAPFKPRQEDYNLPP-FYQPNPGRDASSLSPLFPFHSQYSNGL 78


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
           protein ZK287.4 protein.
          Length = 1208

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
 Frame = -2

Query: 690 QPDHQIPDSIHQPPPDLTSISINPL--------TPY*KEFA-PGLKPPLSSEAPSAYLTP 538
           QP H I  S   PPPD   IS NP+        TP    +  P L PP ++ +P   L P
Sbjct: 651 QPTHYIVPSQSSPPPDPYVIS-NPIPTLSPTAGTPSFNIYPYPSLPPPTTTISPLPTLLP 709

Query: 537 SSLGMXKGVSPPYFQVNDESQASRLISRHST 445
            ++      SPP    N++S  SR I   +T
Sbjct: 710 PNISYV--TSPP---DNNDSPCSRSIYGDAT 735


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,423,753
Number of Sequences: 27780
Number of extensions: 345357
Number of successful extensions: 978
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)