Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_M06
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.65 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   1.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   2.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.4  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   6.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 726 FKFGFRMHNSDEMDFVIDKKNIQYVR 649
           FK+G+  H +    + +D KN++Y R
Sbjct: 662 FKYGYVSHANQRNMYKLDLKNMKYTR 687


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 313 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 215
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 659 CIFFLSITKSISSLLCILKPNLNV 730
           C+FFL+   S + +LC   P+ N+
Sbjct: 434 CVFFLTTIVSTTVILCGSPPSANI 457


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 750 PNDXXXXTFKFGFRMHNSDEMDFVIDKK 667
           P D       FG  +H+ +E++  +DKK
Sbjct: 177 PYDTHRCRINFGSWVHSGEEVNIFLDKK 204


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 622 CPVRCRARTVARWKLAWQCS 563
           C VRC A +  RW   W+ S
Sbjct: 19  CSVRCSAASGLRWFEIWRDS 38


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 641 LLTRTYCIFFLSITKSISSLLCILKPNLNVQXCXSL 748
           +L  T CI    + +     LC+ + NLN+    SL
Sbjct: 6   ILLFTLCIVSYMMVRCDDITLCLKQENLNLDDIDSL 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,349
Number of Sequences: 438
Number of extensions: 2498
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)