Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_M04
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 166 2e-41
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 163 1e-40
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.1
06_03_0543 + 21967787-21970261 29 5.4
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.2
04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995... 28 7.2
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 9.5
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 166 bits (403), Expect = 2e-41
Identities = 72/122 (59%), Positives = 94/122 (77%)
Frame = -2
Query: 680 LRGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 501
+ GR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VD
Sbjct: 103 IAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVD 162
Query: 500 IAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 321
I IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++A
Sbjct: 163 IGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAP 222
Query: 320 EQ 315
Q
Sbjct: 223 AQ 224
Score = 32.7 bits (71), Expect = 0.33
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -1
Query: 765 PXDVFVXSSRPFGQRAVLK 709
P D+ V S+RP+GQRAVLK
Sbjct: 75 PQDIIVQSARPYGQRAVLK 93
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 163 bits (396), Expect = 1e-40
Identities = 70/118 (59%), Positives = 91/118 (77%)
Frame = -2
Query: 680 LRGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 501
+ GR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VD
Sbjct: 103 IAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVD 162
Query: 500 IAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
I IP N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 163 IGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
Score = 32.7 bits (71), Expect = 0.33
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -1
Query: 765 PXDVFVXSSRPFGQRAVLK 709
P D+ V S+RP+GQRAVLK
Sbjct: 75 PQDIIVQSARPYGQRAVLK 93
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 458 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 369
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>04_03_0036 -
9950353-9950379,9950753-9950791,9951021-9951194,
9951287-9951415,9951782-9952012,9952655-9952732,
9953035-9953055,9953790-9953855,9953935-9954015,
9954148-9954920,9955461-9955654,9956723-9956817,
9958190-9958219,9958334-9958453,9959185-9959262,
9959428-9959505,9960459-9960488,9960614-9960739,
9961239-9961379,9963416-9963532,9963619-9963670,
9963759-9963890,9964668-9964720,9964816-9964911,
9965255-9965260,9965416-9965561,9966494-9966629,
9966885-9967038,9968017-9968154,9968268-9968614
Length = 1295
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 573 NGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSPQ 680
+G++V+C + ++ T CSLDL + S+ + SP+
Sbjct: 326 SGVLVICANSIHYHSQSTSCSLDLNNFSSHPDGSPE 361
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 357 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 473
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,446,864
Number of Sequences: 37544
Number of extensions: 389053
Number of successful extensions: 1034
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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