Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_M02
(807 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.35
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.4
01_01_1235 - 10017728-10017766,10018891-10019352 31 1.4
11_07_0014 + 27379941-27379974,27381975-27382033,27382561-273827... 30 2.5
09_02_0267 - 6485428-6485895,6488255-6488303,6488466-6488469,648... 30 2.5
07_03_0846 - 21983581-21986055 29 3.3
07_03_0699 + 20772415-20773450,20789050-20789606,20790971-207915... 29 3.3
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.3
03_05_0183 - 21681673-21682524 29 4.4
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.8
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 29 5.8
07_03_0414 + 17892133-17893590 28 7.6
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 68 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKPDSID 196
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1
Query: 336 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 202
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>01_01_1235 - 10017728-10017766,10018891-10019352
Length = 166
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = -1
Query: 402 GRAAGGAKLPSAGLCLNASKAEASLAESGKDM--LTVEPR---ESGGSKQCDFTSRVSHS 238
G GGA + + L+A+ L G + L + PR S + TS + S
Sbjct: 66 GEDGGGAGVRACSSDLSAAAFADELFREGALLRPLKLPPRLQTPSASAAASAATSPTAAS 125
Query: 237 KRETRRRSPFGSRRSMLSGF 178
K + RSPF SRRS GF
Sbjct: 126 KAASSSRSPFASRRSKHEGF 145
>11_07_0014 +
27379941-27379974,27381975-27382033,27382561-27382782,
27383727-27383810,27385054-27385131,27385716-27385832,
27385956-27386019,27386399-27386402,27386565-27386613,
27388973-27389440
Length = 392
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 161 DARVKKKPDSIDLRDPNGLRRRVSRFE-CETRLVKSHCLEPPDSRGSTVSISLPDSARLA 337
D KKKP S + N R+RV+ FE +R + L S +T +LPD+ L
Sbjct: 253 DGEPKKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRAMASHTNTHRSTLPDTCDLF 312
Query: 338 SAL 346
+ L
Sbjct: 313 ATL 315
>09_02_0267 -
6485428-6485895,6488255-6488303,6488466-6488469,
6488849-6488912,6489036-6489152,6489737-6489814,
6491058-6491141,6492086-6492307,6492835-6492893,
6494894-6494927
Length = 392
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 161 DARVKKKPDSIDLRDPNGLRRRVSRFE-CETRLVKSHCLEPPDSRGSTVSISLPDSARLA 337
D KKKP S + N R+RV+ FE +R + L S +T +LPD+ L
Sbjct: 253 DGEPKKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRAMASHTNTHRSTLPDTCDLF 312
Query: 338 SAL 346
+ L
Sbjct: 313 ATL 315
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 194 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 343
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>07_03_0699 +
20772415-20773450,20789050-20789606,20790971-20791567,
20792258-20792413
Length = 781
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +2
Query: 71 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKPDSIDLRDPNGLRRRVSRFECET 250
+ +PR S +D S P H ++ + D VKK P+ +L D G E E
Sbjct: 591 AASPRLTSISDSDGSYPVHAAAMFGRTKIIDELVKKCPNYYELVDDKGRNLLHIAVESEQ 650
Query: 251 RLVKSH 268
+V H
Sbjct: 651 EMVVRH 656
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 423 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 325
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 635 SQAFIATLLFDPSMSALPIIAKQNSPS 555
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -1
Query: 483 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 319
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 318 GKDMLTVEPRESGGSK 271
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 345 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSGFFL 172
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 171 TRASR 157
TRA+R
Sbjct: 64 TRAAR 68
>07_03_0414 + 17892133-17893590
Length = 485
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +1
Query: 415 QMSETAVPLVLSSITIATTSHQ*GKTNLSHDGLIPAHVPF*WVNNPTL-GEFCFAMIGRA 591
Q + V + L S+T+ + T H GL+ A PF WV P + G A + A
Sbjct: 279 QADGSVVYVSLGSLTVISLEQF---TEFLH-GLVAAGYPFLWVLRPDMVGASQSAALREA 334
Query: 592 DIEGSKSNVAMNAWLPQ 642
KS + W PQ
Sbjct: 335 VAAAGKSKARVVEWAPQ 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,931,700
Number of Sequences: 37544
Number of extensions: 505115
Number of successful extensions: 1447
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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