Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_L24
(966 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.0
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 30 2.4
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 30 3.2
01_01_0070 - 542603-542686,542803-543441 29 4.2
10_08_0638 - 19503580-19503990 29 5.5
03_03_0193 - 15312568-15312753,15312811-15312933,15313112-153131... 29 5.5
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 5.5
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417... 29 7.3
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 29 7.3
06_01_0931 + 7192519-7194075 29 7.3
07_03_0890 - 22332768-22333382 28 9.7
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 28 9.7
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 28 9.7
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 28 9.7
02_04_0029 + 19036176-19036481,19036602-19036733,19036814-190369... 28 9.7
01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983 28 9.7
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.5 bits (68), Expect = 1.0
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 493 PPPPXXKKXPPPPPXK 446
PPPP K PPPPP K
Sbjct: 327 PPPPPPKAAPPPPPPK 342
Score = 31.1 bits (67), Expect = 1.4
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 493 PPPPXXKKXPPPPPXK 446
PPPP K PPPPP K
Sbjct: 336 PPPPPPKGPPPPPPAK 351
Score = 31.1 bits (67), Expect = 1.4
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 493 PPPPXXKKXPPPPPXK 446
PPPP K PPPPP K
Sbjct: 345 PPPPPAKGPPPPPPPK 360
Score = 29.9 bits (64), Expect = 3.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 493 PPPPXXKKXPPPPP 452
PPPP K PPPPP
Sbjct: 344 PPPPPPAKGPPPPP 357
Score = 29.5 bits (63), Expect = 4.2
Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = -3
Query: 493 PPPPXXKKX-PPPPPXK 446
PPPP KK PPPPP K
Sbjct: 367 PPPPGGKKGGPPPPPPK 383
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 30.3 bits (65), Expect = 2.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 493 PPPPXXKKXPPPPPXK 446
PPPP + PPPPP K
Sbjct: 366 PPPPPPRPPPPPPPIK 381
Score = 28.7 bits (61), Expect = 7.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 493 PPPPXXKKXPPPPP 452
PPPP + PPPPP
Sbjct: 365 PPPPPPPRPPPPPP 378
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 29.9 bits (64), Expect = 3.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 493 PPPPXXKKXPPPPP 452
PPPP ++ PPPPP
Sbjct: 37 PPPPPRRRTPPPPP 50
Score = 29.1 bits (62), Expect = 5.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 494 PPPPXXKKXTPPPP 453
PPPP ++ TPPPP
Sbjct: 36 PPPPPPRRRTPPPP 49
Score = 28.7 bits (61), Expect = 7.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 493 PPPPXXKKXPPPPP 452
PPPP + PPPPP
Sbjct: 38 PPPPRRRTPPPPPP 51
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 29.5 bits (63), Expect = 4.2
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -3
Query: 493 PPPPXXKKXPPPP 455
PPPP KK PPPP
Sbjct: 82 PPPPTPKKAPPPP 94
>10_08_0638 - 19503580-19503990
Length = 136
Score = 29.1 bits (62), Expect = 5.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 493 PPPPXXKKXPPPPP 452
PPPP KK PP PP
Sbjct: 115 PPPPPRKKPPPQPP 128
>03_03_0193 -
15312568-15312753,15312811-15312933,15313112-15313134,
15313196-15313349,15314443-15314754
Length = 265
Score = 29.1 bits (62), Expect = 5.5
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 447 FXGGGGGXFFXXGGG 491
F GGGGG FF GGG
Sbjct: 44 FSGGGGGHFFGGGGG 58
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.1 bits (62), Expect = 5.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 493 PPPPXXKKXPPPPPXK 446
PPPP PPPPP K
Sbjct: 351 PPPPPPPPPPPPPPPK 366
>12_01_0526 -
4171313-4171417,4171514-4171597,4171688-4171758,
4171814-4171891,4174482-4174569,4174659-4174850,
4174939-4175802
Length = 493
Score = 28.7 bits (61), Expect = 7.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 493 PPPPXXKKXPPPPP 452
PPPP + PPPPP
Sbjct: 149 PPPPPQESTPPPPP 162
Score = 28.3 bits (60), Expect = 9.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 494 PPPPXXKKXTPPPP 453
PPPP ++ TPPPP
Sbjct: 148 PPPPPPQESTPPPP 161
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 28.7 bits (61), Expect = 7.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 490 PPPXXKKXPPPPPXK 446
PPP K PPPPP K
Sbjct: 591 PPPAPKAAPPPPPPK 605
>06_01_0931 + 7192519-7194075
Length = 518
Score = 28.7 bits (61), Expect = 7.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 493 PPPPXXKKXPPPPP 452
PPPP + PPPPP
Sbjct: 133 PPPPPRSQAPPPPP 146
Score = 28.3 bits (60), Expect = 9.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 493 PPPPXXKKXPPPPP 452
PPPP + PPPPP
Sbjct: 134 PPPPRSQAPPPPPP 147
>07_03_0890 - 22332768-22333382
Length = 204
Score = 28.3 bits (60), Expect = 9.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 493 PPPPXXKKXPPPPP 452
PPPP + PPPPP
Sbjct: 75 PPPPPAEATPPPPP 88
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 28.3 bits (60), Expect = 9.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 493 PPPPXXKKXPPPPP 452
PPPP + PPPPP
Sbjct: 505 PPPPENEPAPPPPP 518
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 28.3 bits (60), Expect = 9.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 493 PPPPXXKKXPPPPP 452
PPPP + PPPPP
Sbjct: 55 PPPPPTQPAPPPPP 68
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 493 PPPPXXKKXPPPPPXK 446
PPPP K+ P PPP K
Sbjct: 230 PPPPPPKQEPCPPPPK 245
>02_04_0029 +
19036176-19036481,19036602-19036733,19036814-19036933,
19037763-19037837,19038282-19038392,19038528-19038635,
19038865-19038933,19038934-19039004,19039095-19039147,
19039223-19039326,19039424-19039696
Length = 473
Score = 28.3 bits (60), Expect = 9.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3
Query: 493 PPPPXXKKXPPPPP 452
PPPP PPPPP
Sbjct: 43 PPPPSSSSSPPPPP 56
>01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983
Length = 448
Score = 28.3 bits (60), Expect = 9.7
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 447 FXGGGGGXFFXXGGGG 494
F GGGGG F GGGG
Sbjct: 324 FPGGGGGGFSGGGGGG 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,422,828
Number of Sequences: 37544
Number of extensions: 243743
Number of successful extensions: 4719
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3189
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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