Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_L24
         (966 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    30   2.1  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    29   3.7  
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    29   5.0  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    29   5.0  
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    29   6.5  
AL023844-8|CAA19534.1|  396|Caenorhabditis elegans Hypothetical ...    28   8.7  

>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 493 PPPPXXKKXPPPPPXK 446
           PPPP  ++ PPPPP +
Sbjct: 21  PPPPSPRRAPPPPPHR 36


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 493 PPPPXXKKXPPPPP 452
           PPPP   K PPPPP
Sbjct: 89  PPPPPTLKAPPPPP 102


>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 493 PPPPXXKKXPPPPP 452
           PPPP  ++ PPPPP
Sbjct: 298 PPPPIKEESPPPPP 311


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 493 PPPPXXKKXPPPPP 452
           PPPP  ++ PPPPP
Sbjct: 298 PPPPIKEESPPPPP 311


>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
           protein Y59A8B.1a protein.
          Length = 1641

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 493 PPPPXXKKXPPPPP 452
           PPPP   + PPPPP
Sbjct: 784 PPPPRASEPPPPPP 797


>AL023844-8|CAA19534.1|  396|Caenorhabditis elegans Hypothetical
           protein Y48A6B.13 protein.
          Length = 396

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 490 PPPXXKKXPPPPPXK 446
           PPP  +K PPPPP +
Sbjct: 314 PPPPTQKAPPPPPTR 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,861,385
Number of Sequences: 27780
Number of extensions: 138169
Number of successful extensions: 1539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)