Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_L23
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   1.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    28   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.8 bits (49), Expect(2) = 1.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 420 PPPPPPXXXKK 388
           PPPPPP   KK
Sbjct: 25  PPPPPPGYVKK 35



 Score = 22.6 bits (46), Expect(2) = 1.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 438 FFXXSXPPPPPP 403
           F   S PPPPPP
Sbjct: 18  FEPPSQPPPPPP 29


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 6   FLXTLXAGVRRKLGXPRXISKXGRXLEFEPIL 101
           F   + A V R +G PR     GR L F PIL
Sbjct: 147 FFSEIYAAVLRVVGPPRANETPGRNLPFSPIL 178


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 522 PPXPPPXXAGGXXPXXXPP 578
           PP PPP  AG   P   PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 679 RXPXXPHPXLXAXXPAPPXXPXPPP 753
           + P  P P +    PAP   P PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPP 754



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 522 PPXPPPXXAGGXXPXXXPPLXLXXRPXTXPPP 617
           P  PP    GG  P   PP      P   PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +1

Query: 520 PPPXPPXLXRGXRXPXXAPXXXSXXAXXPXPPP 618
           PPP PP   R    P       +     P PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,162,112
Number of Sequences: 5004
Number of extensions: 12189
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)