Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_L20
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   3.1  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    27   3.1  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    26   7.1  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   9.4  

>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -2

Query: 615  HLHFEIRSTPFXYTTGRLSPEKSQWISNDNTEGSARPRVKLELKNPDIPTRSSVPLAVDS 436
            H +F I+S+P   T G+  P+K       N   S +P VK   +  +  TR+  P   +S
Sbjct: 1202 HQNFGIKSSPAISTNGKTQPKK----QTANRRQSGKPNVK-SAQKIESATRTPSPAISES 1256


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = -2

Query: 552 KSQWISNDNTEGSARPRVKLELKNPDIPTRSSVPLAVDSEHDQYVEFTNSDLEADAAQST 373
           KS+    +N   S  P  KLE K+P +   +S    V    D    F    L + A+ S 
Sbjct: 308 KSRNAETENQRSSKPPAPKLESKSPALQNHASTQNVVSKRSDYEKPFAEPHLNS-ASDSA 366

Query: 372 VP 367
            P
Sbjct: 367 EP 368


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 261 RLRTYPHARHVRAEPPAD 208
           RLR YP  +H+  +PP++
Sbjct: 105 RLRKYPGQKHINGKPPSN 122


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 567  RLSPEKSQWISNDNTEGSARPRVKLELKNPDIPTRSSVPLAVDSE 433
            +LS ++ +W+S ++  G+ RP    +L+ P      +   AVDS+
Sbjct: 1278 KLSKKQPEWVSFNSFSGTVRPSNSEKLQRPQ-QLSVAATSAVDSK 1321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,016
Number of Sequences: 5004
Number of extensions: 33562
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)