Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_L20
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0617 - 35124114-35124148,35124243-35124335,35124415-351249...    28   7.4  

>03_06_0617 -
           35124114-35124148,35124243-35124335,35124415-35124919,
           35125039-35125238,35125514-35125604,35125699-35126769
          Length = 664

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -2

Query: 531 DNTEGSA----RPRVKLELKNPDIPTRSSVPLAVDSEHDQYVEFTNSD 400
           D TEG A    RP+ + + +   +P+RS  P       D+ VE  N D
Sbjct: 13  DATEGQAAAKFRPKARAKPRKTSLPSRSLAPHPTVESTDENVETLNKD 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,043,745
Number of Sequences: 37544
Number of extensions: 261127
Number of successful extensions: 737
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)