Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_L19
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 32 0.11
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 30 0.44
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 27 2.3
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 7.1
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 7.1
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 7.1
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 25 9.4
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 9.4
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 9.4
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 9.4
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 31.9 bits (69), Expect = 0.11
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +3
Query: 447 PTAPTGDERELRARAAHSAFFAVKPKRDPLPFAL-LSLTERHDQVAKPGHGLPKNXGPLT 623
PT + DE + + + + AL +S ER++ + P H PK P T
Sbjct: 529 PTENSADETYTCEECEQKITLSERNEHEDYHIALSISRKERYNNLVPPSHDKPKQVKPKT 588
Query: 624 CGR*QPARXXLSPARDEVRRERS 692
GR + +P DE +R+
Sbjct: 589 YGR-KTGSKHYAPLSDETNNKRA 610
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 29.9 bits (64), Expect = 0.44
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3
Query: 435 RTRHPTAPTGDERELRARAAHSAFFAVKPKRD 530
R RHP G +REL RA S +F KRD
Sbjct: 1034 RYRHPVVSCGRKRELILRALCSGYFTNVAKRD 1065
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 402 PPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKRD 530
P + P+T H R PTAP E R RA+ A + K+D
Sbjct: 83 PAEVVPAT-HKRQVRPTAPRAGRPEPRERASADAGYRRAEKKD 124
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 417 AVGPVVRRRKVA-PVHRSRCVSETTSCGIFPGMECRPIN 304
A V+ RK+A P R R S +S GIF + +P++
Sbjct: 31 ASADVMATRKIAKPKSRKRPTSGVSSPGIFANLAAKPVS 69
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +1
Query: 145 FLTGDYALKKAREALAPQNDYRLNPIEPHHSDSTKPTVPHSARRRLAVAGT 297
F +G ++ + L P RLNP+ P + P++P + + +GT
Sbjct: 75 FQSGPFSKSRRENTLLP----RLNPLAPIGARQPNPSIPQQFSKPINESGT 121
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 142 QFLTGDYALKKAREALAPQNDYRLNPIEP 228
+ +TGDY ++ + L +Y +N IEP
Sbjct: 579 KLITGDYEDRRFNDGLIKIREYLVNDIEP 607
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3
Query: 250 VSWSRSGGARWGLVGSRSAGQ 188
++W+ G RW L GS +G+
Sbjct: 283 INWTIREGERWALTGSNGSGK 303
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Frame = +3
Query: 129 PSPPPISHRRLRLEKGARSTCPA------ERLPTKPHRAPPLRLHETHGTAQCAPKARRR 290
P P P S + LRL RS P+ R P+ H + P L G + P R
Sbjct: 329 PLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPDGFPR 388
Query: 291 RY 296
R+
Sbjct: 389 RF 390
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 377 TGATLRRLTTGPTAEYRAPPHP 442
TG TLRR ++G TA R HP
Sbjct: 55 TGDTLRRQSSGATALERLVSHP 76
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 26 GIHLRIPXXXXXXXXLCRT--PAPPEGKKGRREEPRSFTSPNFSQET 160
GIH+ P L +T P PP G S+TS N Q +
Sbjct: 263 GIHITTPQGPLMINDLGKTTAPPPPHGSTTPLPAAASYTSMNMKQSS 309
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,128,565
Number of Sequences: 5004
Number of extensions: 64417
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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