Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_L19
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.9  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   3.3  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   5.7  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   7.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   7.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 669 RVLGRDXSLRAVIARMLE-DXNSLGG 595
           RVL RD  +RAV+A+  + D   +GG
Sbjct: 116 RVLSRDVQVRAVVAQAYKVDVEVIGG 141


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 669 RVLGRDXSLRAVIARMLE-DXNSLGG 595
           RVL RD  +RAV+A+  + D   +GG
Sbjct: 116 RVLSRDVQVRAVVAQAYKVDVEVIGG 141


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 376 HRSHLAPPHHRTNSRVPGTPAPGTRQ 453
           H SH A PHH+ ++ +  +  P   Q
Sbjct: 433 HHSHAATPHHQHSTPLAHSSYPAAIQ 458


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
 Frame = +1

Query: 244 TKPTVPHSARRRLAVAGTHPVNRTALH-PRENPAGRRL----------GDTP*AVHRSHL 390
           ++P  PH   RR A     P N   ++ P+  P   RL          G+    V+ S  
Sbjct: 106 SQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAELEAEPGNNR-PVYISQP 164

Query: 391 APPHHRTNSRVPGTPAPGTRQPL 459
            PPH R          PG  +P+
Sbjct: 165 RPPHPRLRREAEPEAEPGNNRPV 187



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
 Frame = +1

Query: 247 KPTVPHSARRRLAVAGTHPVNRTALH-PRENPAGRRL----------GDTP*AVHRSHLA 393
           +P  PH   RR A     P N   ++ P+  P   RL          G+    V+ S   
Sbjct: 51  QPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAELEAEPGNNR-PVYISQPR 109

Query: 394 PPHHRTNSRVPGTPAPGTRQPL 459
           PPH R          PG  +P+
Sbjct: 110 PPHPRLRREAEPEAEPGNNRPV 131


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/54 (24%), Positives = 18/54 (33%)
 Frame = +1

Query: 298 HPVNRTALHPRENPAGRRLGDTP*AVHRSHLAPPHHRTNSRVPGTPAPGTRQPL 459
           HP  R    P+  P   R       ++     PPH R          PG  +P+
Sbjct: 57  HPRLRREAEPKAEPGNNR------PIYIPQPRPPHPRLRREAESEAEPGNNRPV 104


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -2

Query: 335 FSRGWSAVLLTGWVPATASLRRALCGT 255
           FS GW+   + GW           CGT
Sbjct: 178 FSLGWTIAPMFGWNRYVPEGNMTACGT 204


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 120 SSLLPFFPSGGAGVRHNPVRYPP 52
           S L+    + G G  H+P ++PP
Sbjct: 387 SGLVSGSSTPGTGREHDPAKFPP 409


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 584  TWSWPPKEXWSSNM 625
            TW  PP+E W+  +
Sbjct: 996  TWKPPPREDWNGEI 1009


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 137 SPNFSQETTP*KRR 178
           SPN ++ETTP K R
Sbjct: 782 SPNSTKETTPKKER 795


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -2

Query: 335 FSRGWSAVLLTGWVPATASLRRALCGT 255
           FS GW+   + GW           CGT
Sbjct: 54  FSLGWTIAPMFGWNRYVPEGNMTACGT 80


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +1

Query: 298 HPVNRTALHPRENPAGRRLGDTP*AVHRSHLAPPHHRTNSRVP 426
           +P+     HP   P G          H SHL  P  R NS+ P
Sbjct: 17  YPMVVHVYHPYRQPDGMNQCQAVNG-HCSHLCLPAPRINSKSP 58


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +1

Query: 298 HPVNRTALHPRENPAGRRLGDTP*AVHRSHLAPPHHRTNSRVP 426
           +P+     HP   P G          H SHL  P  R NS+ P
Sbjct: 17  YPMVVHVYHPYRQPDGMNQCQAVNG-HCSHLCLPAPRINSKSP 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,418
Number of Sequences: 438
Number of extensions: 5940
Number of successful extensions: 20
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)