Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_L16
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 5e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.17
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.70
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 29 0.70
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 4.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.9
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 4.9
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect(2) = 5e-04
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 484 PPPPPPPGXXXKKK 443
PPPPPPPG K+K
Sbjct: 24 PPPPPPPGYVKKRK 37
Score = 29.1 bits (62), Expect(2) = 5e-04
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 487 PPPPPPPPG 461
PPPPPPPPG
Sbjct: 9 PPPPPPPPG 17
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Frame = -2
Query: 527 GGXXXPPXXXXXXPP--PPPXPPXXXXKKK 444
G PP PP PPP PP KK+
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.17
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -3
Query: 487 PPPPPPPPGXXXKKKXXXGGGGXPPP 410
PPPPPPPPG G G PPP
Sbjct: 761 PPPPPPPPG--------VAGAGPPPP 778
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 512 PPXXXXXXPPPPPXPPXXXXKKKXXXGXGGXPPP 411
PP PPPPP PP G G PPP
Sbjct: 753 PPAPIMGGPPPPPPPP-------GVAGAGPPPPP 779
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 338 PPPPXXXXXXPXXXXXGXPXXXKXGGGXXPPXPP 439
PPPP P P GG PP PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 512 PPXXXXXXPPPPPXPP 465
PP PPPPP PP
Sbjct: 767 PPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 487 PPPPPPPP 464
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.70
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Frame = -3
Query: 484 PPPPPPPGXXXKKKXXXGGG----GXPPP 410
PPPPPPP + K G G PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPP 339
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 29.5 bits (63), Expect = 0.70
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 487 PPPPPPPPGXXXKK 446
PPPPPPPP KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
Score = 26.2 bits (55), Expect = 6.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 484 PPPPPPPGXXXKKK 443
PPPPPPP +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 487 PPPPPPPP 464
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 487 PPPPPPPP 464
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 487 PPPPPPPP 464
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 487 PPPPPPPP 464
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 487 PPPPPPPP 464
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 487 PPPPPPPP 464
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 487 PPPPPPPP 464
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,077
Number of Sequences: 5004
Number of extensions: 21590
Number of successful extensions: 204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -