Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_L14
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 107 1e-24
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 33 0.062
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 1.0
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 27 2.3
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 27 3.1
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 4.0
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 5.4
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 7.1
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 7.1
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 9.4
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 9.4
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 107 bits (258), Expect = 1e-24
Identities = 49/88 (55%), Positives = 63/88 (71%)
Frame = -2
Query: 787 MIEFRRVRSGIQGEKEGMVTMHDIXDAQWSYETTKTRLIFVE*SNLLEGLLIAHKRIFIK 608
M E RRVRSG E + +VTMHD+ DAQW Y+ T+ LE LL+ +KRI +K
Sbjct: 218 MQELRRVRSGCLSENDDIVTMHDVLDAQWIYDNTRDESYLRRVIRPLESLLVGYKRIVVK 277
Query: 607 DSAVNAVCYGAKVLLPGILRYEDGIEVD 524
DSAVNA+CYGAK+++PG+LRYE GIEV+
Sbjct: 278 DSAVNAICYGAKLMIPGLLRYEAGIEVN 305
Score = 94.3 bits (224), Expect = 2e-20
Identities = 38/65 (58%), Positives = 55/65 (84%)
Frame = -3
Query: 531 KLTQEIVIVTTKGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKAS 352
++ +EIV++TTKGEA+A+ +A M+T +++CDHGV AK+KR IMERD YPR+WGLGP++
Sbjct: 303 EVNEEIVLITTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSM 362
Query: 351 QKKIL 337
+KK L
Sbjct: 363 KKKTL 367
Score = 52.4 bits (120), Expect = 7e-08
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = -1
Query: 350 RKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYN 252
+KK+ +GKLDKYG+PNENTP +W SY++Y+
Sbjct: 363 KKKTLKKEGKLDKYGRPNENTPADWSKSYIDYS 395
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 32.7 bits (71), Expect = 0.062
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Frame = -1
Query: 365 DRKPHRKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRKRTAST 186
D + +S K D E++ +E +S + + ++E E+ + E +K+ +
Sbjct: 18 DSSEENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKK--AV 75
Query: 185 ANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDT---SESPETAEQPADDSVR 27
A +ED + E +E + DSE E+++ ++ SE +E+ +D+S R
Sbjct: 76 AASEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESER 131
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = -1
Query: 236 ENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPET 57
E + VE+ K+ S+ ++ D + S + E DSE+ + ++ P +
Sbjct: 186 EEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPAS 245
Query: 56 AEQPA 42
E+PA
Sbjct: 246 EERPA 250
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 287 PKEWLNSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQ 144
PK + N+ N+KK +GD + R A+ A+A D +V KQ
Sbjct: 275 PKAFFNTDDEDNMKKSSSHGDSEVVEASDRYANQADAADAEVDNIEKQ 322
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = -1
Query: 329 QGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRK 201
QG+LD + KP ++PK+ +++ + K++ ++ G E ++
Sbjct: 338 QGRLDSFFKPVPSSPKKPVDTKSKGSAKRKRDSNKGGESKKKR 380
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 2 FFFFFFSLCAQNHLLVVL 55
FFFFFFS C + H+ + +
Sbjct: 80 FFFFFFSHCRRFHIAIFI 97
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 5.4
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Frame = -1
Query: 320 LDKYGKP--NENTPKEWLNSYVNYNV-------KKEPENGDGVEEGSRKRTASTANAEDP 168
+D+YG+P + KE Y N E + + V S K T S ++
Sbjct: 65 VDRYGRPLNQDKATKEIDRLYELENEGSSSSSESSEITDNEEVASASSKSTKSEELTDEE 124
Query: 167 DVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPETAE 51
EV SE+ E+DA +T PE +E
Sbjct: 125 SEDEEVYDPARGEGIISTSESSDESDAESETEAQPEISE 163
>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 237 RFFLNIIVD-VTV*PFFWCVLIWFA-IFVKFPLXV*GFFSVRLSVRDPIFWGTCLVPL*H 410
RF+L+ D + + P W ++ + +F + P + +R RDP+ W L+ H
Sbjct: 62 RFYLSTYEDPILLIPAPWKTALFSSELFFQVPFFIWVSLRLRKKARDPVLWVAILIYGVH 121
Query: 411 A 413
A
Sbjct: 122 A 122
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = -1
Query: 245 KEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADA----TMD 78
KE E DG+++ S + + + E P+ ++++EA E A +
Sbjct: 282 KESETIDGIDDKSLRSSTREVSVESPNEDSVNDDSSSDVSDEKETEAKHEIRAPAIIVRE 341
Query: 77 TSESPETAEQPADDS 33
TS P TA +D+
Sbjct: 342 TSSHPSTAVPSENDT 356
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -1
Query: 272 NSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDV 162
N YV+ N E +GD + E R R + ++ D+
Sbjct: 3 NEYVDMNSSSEDSDGDSILEEGRLRPSFRGQQKERDM 39
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 9.4
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +2
Query: 281 LLVCSHLVCHICQVSLXCM 337
+L C+H +CH+C + L +
Sbjct: 93 VLPCNHRMCHVCALRLRAL 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,521
Number of Sequences: 5004
Number of extensions: 60322
Number of successful extensions: 181
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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