Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_L14
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1408 - 26353389-26355191 100 3e-21
03_03_0094 + 14378953-14380728 100 3e-21
04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955 43 3e-04
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112... 33 0.20
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 31 1.0
12_01_0400 + 3169597-3170504,3170510-3171269 29 3.2
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 29 3.2
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 28 7.4
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 28 7.4
06_03_0789 + 24630552-24631171,24631240-24631279,24632422-246324... 28 9.7
>07_03_1408 - 26353389-26355191
Length = 600
Score = 99.5 bits (237), Expect = 3e-21
Identities = 40/63 (63%), Positives = 55/63 (87%)
Frame = -3
Query: 522 QEIVIVTTKGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKK 343
+E+V++TTKGEA+A+ +A MTT+ MA+CDHG AK+KRV+M+RDTYPRKWGLGP A +KK
Sbjct: 345 EEVVLMTTKGEAIAIGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKK 404
Query: 342 ILI 334
++
Sbjct: 405 KMV 407
Score = 99.1 bits (236), Expect = 3e-21
Identities = 45/87 (51%), Positives = 63/87 (72%)
Frame = -2
Query: 787 MIEFRRVRSGIQGEKEGMVTMHDIXDAQWSYETTKTRLIFVE*SNLLEGLLIAHKRIFIK 608
M E RRVRSGI GE++ MVTMHD+ DA+W+ + LE LL ++KR+ +K
Sbjct: 257 MQELRRVRSGILGEQDNMVTMHDVMDARWAMDNYNDETYLRRIVMPLEVLLTSYKRLVVK 316
Query: 607 DSAVNAVCYGAKVLLPGILRYEDGIEV 527
DSAVNA+CYGAK+++PG+LR+E+ I+V
Sbjct: 317 DSAVNAICYGAKLMIPGLLRFENDIDV 343
Score = 42.3 bits (95), Expect = 4e-04
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Frame = -1
Query: 350 RKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDG-VEEGSRKRTASTANAE 174
+KK +G LDK+GKPNE TP EW+ NV P GD + + + AE
Sbjct: 402 KKKKMVAEGLLDKHGKPNEKTPAEWIR-----NVAL-PTGGDAMIASIAAAPEEAKVKAE 455
Query: 173 DPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPETAEQP 45
V+ E +E +D E A+ + +A P
Sbjct: 456 QDVVATEEVKEKKKKKKHKDEEDAADEGRKRKIEDDDASASVP 498
>03_03_0094 + 14378953-14380728
Length = 591
Score = 99.5 bits (237), Expect = 3e-21
Identities = 40/63 (63%), Positives = 55/63 (87%)
Frame = -3
Query: 522 QEIVIVTTKGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKK 343
+E+V++TTKGEA+A+ +A MTT+ MA+CDHG AK+KRV+M+RDTYPRKWGLGP A +KK
Sbjct: 349 EEVVLMTTKGEAIAIGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKK 408
Query: 342 ILI 334
++
Sbjct: 409 KMV 411
Score = 98.7 bits (235), Expect = 5e-21
Identities = 46/87 (52%), Positives = 62/87 (71%)
Frame = -2
Query: 787 MIEFRRVRSGIQGEKEGMVTMHDIXDAQWSYETTKTRLIFVE*SNLLEGLLIAHKRIFIK 608
M E RRVRSGI GE + MVTMHD+ DA+W+ + LE LL ++KR+ +K
Sbjct: 261 MQELRRVRSGILGETDNMVTMHDVMDARWAMDNFNDESYLRRIVMPLEVLLTSYKRLVVK 320
Query: 607 DSAVNAVCYGAKVLLPGILRYEDGIEV 527
DSAVNA+CYGAK+++PG+LR+E+ IEV
Sbjct: 321 DSAVNAICYGAKLMIPGLLRFENEIEV 347
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -1
Query: 350 RKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEG--SRKRTASTANA 177
+KK +G LDK+GKPNE TP EWL + V P GD + G +
Sbjct: 406 KKKKMVAEGLLDKHGKPNEKTPSEWLRNAV------LPAGGDAMIAGIAAAPEPEKPKVK 459
Query: 176 EDPDVSIEVKQE 141
E+ DV+ E K++
Sbjct: 460 EEADVAEETKEK 471
>04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955
Length = 286
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = -2
Query: 787 MIEFRRVRSGIQGEKEGMVTMHDIXDAQWSY 695
M E RVRSGI GE++ MVTMHD+ DA+ +
Sbjct: 231 MQELHRVRSGIHGEQDNMVTMHDVMDARQEF 261
>05_06_0212 +
26410330-26410419,26410562-26410846,26411005-26411208,
26411636-26411692,26411859-26412926
Length = 567
Score = 33.5 bits (73), Expect = 0.20
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Frame = -1
Query: 401 WNETRTPENG-VSDRKPHRKKSSY----XQGKLDKYGKPNENTPKEWLNSYVNYNVKKEP 237
W P+ V+D KPH +K+SY GKL + + + P E + + +K
Sbjct: 248 WRPISHPKRAAVTDAKPHTRKASYAMETESGKLKRNSRRSSAAPVESSQTNIAMETEKSR 307
Query: 236 ENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPET 57
N RK T+STA++ E+++ +S A A +T T E PE
Sbjct: 308 RN-------PRKFTSSTADSVPESQLTELEKVKRNLRKVTNSMAEASKVSTPAT-EIPER 359
Query: 56 AE 51
E
Sbjct: 360 QE 361
>06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -1
Query: 245 KEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTS-E 69
K PE+ E+ S K A T EDP V++E + E + S P + +A ++ E
Sbjct: 1164 KLPEDSTTFEKPSEKDDAGTKQTEDP-VTLEKEPE-----EDKGSVEPTQDNAGLEKPLE 1217
Query: 68 SPETAEQPADDSV 30
E + +P++DSV
Sbjct: 1218 EDEASAKPSEDSV 1230
>12_01_0400 + 3169597-3170504,3170510-3171269
Length = 555
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 350 CEAFGPRPHFLGYVSRSIMTRLSFAATP 433
CEA P H Y +R + R+S AATP
Sbjct: 212 CEATSPVDHLAYYFARGLKLRISGAATP 239
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -1
Query: 200 RTASTANAEDPDVSIEVKQEXXXXXXKRDSEA-PAEADATMD--TSESPETAEQPADDSV 30
RTASTA A P + IE +Q KR EA P E D ++ +S + + +SV
Sbjct: 112 RTASTATAGQPKLDIEDEQSEDQKQNKRKKEASPEECDQAVEGLSSAKAKAKAKQVQESV 171
Query: 29 R 27
+
Sbjct: 172 K 172
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = -1
Query: 398 NETRTPENGVSDRKPHRKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPE---NG 228
+E + + G + P RK+SS G+ + K ++P E L + + K+PE N
Sbjct: 309 SELKKAQAGKTIGCPKRKRSSKNAGENKRKNKGFPSSPNEGLYLRRSKRLTKQPEQPIND 368
Query: 227 DGVEEGSRKRTASTANAEDPDV 162
D V++ + + + N++ PD+
Sbjct: 369 DPVQQPA--ASPNQYNSDPPDI 388
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 28.3 bits (60), Expect = 7.4
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Frame = -1
Query: 389 RTPENGVSDRKPHRK---KSSYX-QGKLDK--YGKPNENTPKEWLNSYVNYNVKKEPENG 228
+ P N + D KP K K Y + + D Y K +N PK + +S KE E
Sbjct: 490 KIPYNDLKDDKPSSKVVRKDRYSDESETDSETYVKKKKNLPKSYHHSDKPAQRGKEKEEN 549
Query: 227 DGVEEGSRKR----TASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPE 60
G RKR + S ++A + ++ + KR + +E+ + D S S +
Sbjct: 550 SGKNVDKRKRHDTDSDSDSHARERKRHLDARAS-LAAQKKRSVTSSSESSESSDYSSSSD 608
Query: 59 TAEQPADDS 33
+ + DS
Sbjct: 609 SESDVSSDS 617
>06_03_0789 +
24630552-24631171,24631240-24631279,24632422-24632486,
24632615-24632660,24633222-24633314,24633736-24633855,
24633931-24633982,24634051-24634123,24634350-24634416,
24634670-24634720,24635026-24635118,24635207-24635308
Length = 473
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 586 CYGAKVLLPGILRYEDGIEVDPRNR 512
CY L+PG+LR E ++ DP R
Sbjct: 395 CYEVYALVPGLLREEVHVQSDPAGR 419
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,751,150
Number of Sequences: 37544
Number of extensions: 407844
Number of successful extensions: 1114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -