Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_L12
         (1015 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   4.5  
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609...    29   4.5  
02_04_0382 - 22501041-22501279,22501717-22501810                       29   4.5  
01_01_0461 - 3414127-3414867                                           29   5.9  
12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159...    25   6.6  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 22/84 (26%), Positives = 25/84 (29%)
 Frame = +1

Query: 163 PLFXXXXXXXPLPPFXGXXKKXNFGXGVXFLXGXPPXGEXPPKFFSQKXXXXXXXXXXXX 342
           P F       P  P      + NFG G       PP    PP+ + Q             
Sbjct: 49  PPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPP----PPQMYYQPPPPPPPYGVNSS 104

Query: 343 VPXKXPPXXXXPXPXFXXPGXPPP 414
            P   PP    P P    P  PPP
Sbjct: 105 QPPPPPPPPPSPPPSAPPPPPPPP 128


>07_03_1140 -
           24258627-24258849,24259967-24260089,24260200-24260921,
           24260945-24261073,24261484-24261714
          Length = 475

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 727 GGGXXGXPPPPPP 689
           GGG  G PPPPPP
Sbjct: 53  GGGGGGWPPPPPP 65



 Score = 28.7 bits (61), Expect = 7.8
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +3

Query: 690 GGGGGGXPXXPPP 728
           GGGGGG P  PPP
Sbjct: 53  GGGGGGWPPPPPP 65


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 727 GGGXXGXPPPPPP 689
           GGG  G PPPPPP
Sbjct: 91  GGGGYGKPPPPPP 103


>01_01_0461 - 3414127-3414867
          Length = 246

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 648 TPPPXFXXKXKXXXGGGGGG 707
           TPPP +    K   GGGGGG
Sbjct: 78  TPPPSYYTAGKVSAGGGGGG 97


>12_02_0478 +
           19514509-19514940,19515749-19515820,19515954-19515986,
           19516169-19516830,19516905-19517045,19518634-19518830,
           19518878-19518965,19518987-19519041,19519501-19519571,
           19519709-19519763,19519881-19519896,19520286-19520361,
           19521202-19521240,19521312-19521333
          Length = 652

 Score = 25.0 bits (52), Expect(2) = 6.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 706 PPPPPPXXXFXXX*XKGGGV 647
           PPPPPP         +GGGV
Sbjct: 83  PPPPPPQQQQQREAARGGGV 102



 Score = 22.2 bits (45), Expect(2) = 6.6
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 724 GGXXGXPPPPPP 689
           G     PPPPPP
Sbjct: 76  GNLSAPPPPPPP 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,325,967
Number of Sequences: 37544
Number of extensions: 371817
Number of successful extensions: 8449
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7628
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2987258700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)