Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_L10
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   149   4e-37
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   149   4e-37
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    27   3.2  
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ...    27   3.2  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.2  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.7  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  149 bits (362), Expect = 4e-37
 Identities = 73/117 (62%), Positives = 87/117 (74%)
 Frame = -2

Query: 457 EMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 278
           ++N KIYRIG G    D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   
Sbjct: 277 QLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATP 329

Query: 277 GPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 107
           GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 330 GPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 49/106 (46%), Positives = 57/106 (53%)
 Frame = -1

Query: 776 AKKGFKLGXSXXTGXPLGDKXKWAKGXXGKTXSXSIXXXPXDEMIDXIXXXXXXXXXXXT 597
           A+K   L      G  + DK +WA+    KT          +EMID I           T
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIK-STFEQNEMIDVIGVTRGKGNEGTT 230

Query: 596 FRWHTKKXPRKTHKVLRKVACIGAWHPXRVSFTVARAGQKGYHHRT 459
            RW TK+ PRKTH+ LRKVACIGAWHP  V +TVARAG  GY HRT
Sbjct: 231 ARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRT 276


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  149 bits (362), Expect = 4e-37
 Identities = 73/117 (62%), Positives = 87/117 (74%)
 Frame = -2

Query: 457 EMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 278
           ++N KIYRIG G    D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   
Sbjct: 277 QLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATP 329

Query: 277 GPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 107
           GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 330 GPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 49/106 (46%), Positives = 57/106 (53%)
 Frame = -1

Query: 776 AKKGFKLGXSXXTGXPLGDKXKWAKGXXGKTXSXSIXXXPXDEMIDXIXXXXXXXXXXXT 597
           A+K   L      G  + DK +WA+    KT          +EMID I           T
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIK-STFEQNEMIDVIGVTRGKGNEGTT 230

Query: 596 FRWHTKKXPRKTHKVLRKVACIGAWHPXRVSFTVARAGQKGYHHRT 459
            RW TK+ PRKTH+ LRKVACIGAWHP  V +TVARAG  GY HRT
Sbjct: 231 ARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRT 276


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/65 (23%), Positives = 34/65 (52%)
 Frame = +3

Query: 315 TSP*WGKPPIGVMDFSDKSYSVDALFLITLPSFLWIPCPIR*IFLFISSTVMITFLTSTS 494
           T+P +    + + D+      +D + + T  SF+W  C +  +F F+    ++T++ ST+
Sbjct: 131 TAPPYWDTTMVIPDYGSNEIYIDGMSVGTGFSFVWSAC-VAILFPFVG--FLVTYVLSTT 187

Query: 495 YSERH 509
           +  R+
Sbjct: 188 HLGRY 192


>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
           Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 486 WSERLSSPYLK*TRKSIVLDKESTKRMAKLLKTMHLLSMTCLRNPLHQ 343
           WS   S   +K TRKS  L K++T   A         S T L+N  H+
Sbjct: 217 WSWHNSKSEVKKTRKSKKLSKKATSPAASATPEKSSTSTTSLKNLRHR 264


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 128 HGYTQEGSYSRRSCGYHNPS 69
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 468 MITFLTSTSYSERHPXRMPSSNAGNFPKNLVCLTGXLLCVPTKSD 602
           MI  L  TS  +       S N   +PK+LV      +C P ++D
Sbjct: 399 MIPNLYPTSAEQMGLYPQDSQNKDTYPKSLVNRPSSAVCEPARND 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,704
Number of Sequences: 5004
Number of extensions: 57177
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)