Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_L10
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 152 4e-37
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 144 6e-35
01_06_1058 - 34147025-34147069,34147190-34147339,34147983-341481... 31 0.83
01_06_0895 - 32804433-32804744,32804948-32805163,32805301-328056... 30 2.5
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.3
02_03_0215 + 16505994-16506542,16506803-16507894 29 3.3
01_06_0195 + 27379266-27379300,27379870-27382174 29 5.8
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 152 bits (368), Expect = 4e-37
Identities = 73/115 (63%), Positives = 87/115 (75%)
Frame = -2
Query: 457 EMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 278
EMNKK+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++MIKGCC+
Sbjct: 280 EMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCV 333
Query: 277 GPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 113
GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 334 GPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 91.1 bits (216), Expect = 1e-18
Identities = 41/65 (63%), Positives = 44/65 (67%)
Frame = -1
Query: 653 DEMIDXIXXXXXXXXXXXTFRWHTKKXPRKTHKVLRKVACIGAWHPXRVSFTVARAGQKG 474
DEMID I RW + PRKTH+ LRKVACIGAWHP RVS+TVARAGQ G
Sbjct: 215 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNG 274
Query: 473 YHHRT 459
YHHRT
Sbjct: 275 YHHRT 279
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 144 bits (350), Expect = 6e-35
Identities = 69/107 (64%), Positives = 83/107 (77%)
Frame = -2
Query: 457 EMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 278
EMNKK+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++MIKGCC+
Sbjct: 280 EMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCV 333
Query: 277 GPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 137
GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K
Sbjct: 334 GPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 91.1 bits (216), Expect = 1e-18
Identities = 41/65 (63%), Positives = 44/65 (67%)
Frame = -1
Query: 653 DEMIDXIXXXXXXXXXXXTFRWHTKKXPRKTHKVLRKVACIGAWHPXRVSFTVARAGQKG 474
DEMID I RW + PRKTH+ LRKVACIGAWHP RVS+TVARAGQ G
Sbjct: 215 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNG 274
Query: 473 YHHRT 459
YHHRT
Sbjct: 275 YHHRT 279
>01_06_1058 -
34147025-34147069,34147190-34147339,34147983-34148117,
34148391-34148449,34149142-34149258,34149448-34149625,
34149715-34149798,34150133-34150201,34150385-34150525,
34150781-34150873,34151338-34151466,34152033-34152371,
34152624-34152674
Length = 529
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = -2
Query: 544 KLPAL-ELGILXGCRSL*LVLVRKVIITVLEMNKKIYRIGQGIHKK 410
+LP + E G++ CR+L + ++ +V I VL+M + I+ G+G+ K+
Sbjct: 6 RLPLIHECGLVMFCRTLKIDVLGQVRIGVLQMTRVIHDSGEGMQKE 51
>01_06_0895 -
32804433-32804744,32804948-32805163,32805301-32805642,
32805778-32806020,32806130-32806582,32806898-32807113,
32808360-32808432,32808750-32808790,32809027-32809118,
32809222-32809333,32810003-32810078,32810154-32810301,
32811195-32811336,32812120-32812196,32813568-32813619
Length = 864
Score = 29.9 bits (64), Expect = 2.5
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Frame = -2
Query: 616 KDTKXSLFVGTQRXYPVRHTRFLGKLPALELGILXGCRSL*LVLVRKVIITVLEMNKKIY 437
K+T + T PV +T + K A+ +L G + L ++ +LE + ++
Sbjct: 64 KETAETFLSSTGLELPVDYTVDVDKRKAIFSFVLEGNALKAIDLTEELAPNLLENDMDLH 123
Query: 436 RIGQGIHKKDGKVIKNNASTE-YDLSEKSITPMGGFPHYGEVNNDFVMI 293
+H + ++++ TE + +K +TP G P Y E DF+ +
Sbjct: 124 FDLLSLHFIE--LVRSRKCTEALEFGQKKLTPFGKVPKYVEKLEDFMAL 170
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 370 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 275
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>02_03_0215 + 16505994-16506542,16506803-16507894
Length = 546
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -2
Query: 490 VLVRKVIITVLEMNKKIYRIG-QGIHKKDGKVI 395
V+ KVI+ LE KK++++G GI+KK+ +V+
Sbjct: 321 VVTGKVILRELEKLKKLHKLGLMGINKKNSQVV 353
>01_06_0195 + 27379266-27379300,27379870-27382174
Length = 779
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = +3
Query: 456 SSTVMITFLTSTSYSERHPXRMPSSNAGNFPKNLVCLTGXLLCVPTKSDXFVSFALGDXN 635
S T I ++ YS + P N PKN+V L C PTK S ++ N
Sbjct: 370 SGTCYIKYVLFNGYSSTN---FPGDNYIKLPKNMVSKQSDLSCNPTKEIVLGSSSMYGMN 426
Query: 636 AVN 644
N
Sbjct: 427 DAN 429
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,049,225
Number of Sequences: 37544
Number of extensions: 378750
Number of successful extensions: 861
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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