Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_L10
         (815 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   228   6e-60
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   228   6e-60
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   228   6e-60
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   228   6e-60
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   228   6e-60

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  228 bits (558), Expect = 6e-60
 Identities = 105/122 (86%), Positives = 113/122 (92%)
 Frame = -2

Query: 457 EMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 278
           E+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+
Sbjct: 290 EINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCI 349

Query: 277 GPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIR 98
           G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++
Sbjct: 350 GSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLK 409

Query: 97  EE 92
           EE
Sbjct: 410 EE 411



 Score =  109 bits (261), Expect = 6e-24
 Identities = 55/93 (59%), Positives = 58/93 (62%)
 Frame = -1

Query: 737 GXPLGDKXKWAKGXXGKTXSXSIXXXPXDEMIDXIXXXXXXXXXXXTFRWHTKKXPRKTH 558
           G  + DK KWA+    K    S      DEMID +           T RWHTKK PRKTH
Sbjct: 198 GGSIEDKVKWAREHLEKPIQVS-NVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTH 256

Query: 557 KVLRKVACIGAWHPXRVSFTVARAGQKGYHHRT 459
           K LRKVACIGAWHP RVS TVARAGQKGYHHRT
Sbjct: 257 KGLRKVACIGAWHPSRVSTTVARAGQKGYHHRT 289


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  228 bits (558), Expect = 6e-60
 Identities = 105/122 (86%), Positives = 113/122 (92%)
 Frame = -2

Query: 457 EMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 278
           E+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+
Sbjct: 279 EINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCI 338

Query: 277 GPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIR 98
           G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++
Sbjct: 339 GSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLK 398

Query: 97  EE 92
           EE
Sbjct: 399 EE 400



 Score =  109 bits (261), Expect = 6e-24
 Identities = 55/93 (59%), Positives = 58/93 (62%)
 Frame = -1

Query: 737 GXPLGDKXKWAKGXXGKTXSXSIXXXPXDEMIDXIXXXXXXXXXXXTFRWHTKKXPRKTH 558
           G  + DK KWA+    K    S      DEMID +           T RWHTKK PRKTH
Sbjct: 187 GGSIEDKVKWAREHLEKPIQVS-NVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTH 245

Query: 557 KVLRKVACIGAWHPXRVSFTVARAGQKGYHHRT 459
           K LRKVACIGAWHP RVS TVARAGQKGYHHRT
Sbjct: 246 KGLRKVACIGAWHPSRVSTTVARAGQKGYHHRT 278


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  228 bits (558), Expect = 6e-60
 Identities = 105/122 (86%), Positives = 113/122 (92%)
 Frame = -2

Query: 457 EMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 278
           E+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+
Sbjct: 266 EINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCI 325

Query: 277 GPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIR 98
           G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++
Sbjct: 326 GSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLK 385

Query: 97  EE 92
           EE
Sbjct: 386 EE 387



 Score =  109 bits (261), Expect = 6e-24
 Identities = 55/93 (59%), Positives = 58/93 (62%)
 Frame = -1

Query: 737 GXPLGDKXKWAKGXXGKTXSXSIXXXPXDEMIDXIXXXXXXXXXXXTFRWHTKKXPRKTH 558
           G  + DK KWA+    K    S      DEMID +           T RWHTKK PRKTH
Sbjct: 174 GGSIEDKVKWAREHLEKPIQVS-NVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTH 232

Query: 557 KVLRKVACIGAWHPXRVSFTVARAGQKGYHHRT 459
           K LRKVACIGAWHP RVS TVARAGQKGYHHRT
Sbjct: 233 KGLRKVACIGAWHPSRVSTTVARAGQKGYHHRT 265


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  228 bits (558), Expect = 6e-60
 Identities = 105/122 (86%), Positives = 113/122 (92%)
 Frame = -2

Query: 457 EMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 278
           E+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+
Sbjct: 266 EINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCI 325

Query: 277 GPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIR 98
           G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++
Sbjct: 326 GSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLK 385

Query: 97  EE 92
           EE
Sbjct: 386 EE 387



 Score =  109 bits (261), Expect = 6e-24
 Identities = 55/93 (59%), Positives = 58/93 (62%)
 Frame = -1

Query: 737 GXPLGDKXKWAKGXXGKTXSXSIXXXPXDEMIDXIXXXXXXXXXXXTFRWHTKKXPRKTH 558
           G  + DK KWA+    K    S      DEMID +           T RWHTKK PRKTH
Sbjct: 174 GGSIEDKVKWAREHLEKPIQVS-NVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTH 232

Query: 557 KVLRKVACIGAWHPXRVSFTVARAGQKGYHHRT 459
           K LRKVACIGAWHP RVS TVARAGQKGYHHRT
Sbjct: 233 KGLRKVACIGAWHPSRVSTTVARAGQKGYHHRT 265


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  228 bits (558), Expect = 6e-60
 Identities = 105/122 (86%), Positives = 113/122 (92%)
 Frame = -2

Query: 457 EMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 278
           E+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+
Sbjct: 279 EINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCI 338

Query: 277 GPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIR 98
           G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++
Sbjct: 339 GSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLK 398

Query: 97  EE 92
           EE
Sbjct: 399 EE 400



 Score =  109 bits (261), Expect = 6e-24
 Identities = 55/93 (59%), Positives = 58/93 (62%)
 Frame = -1

Query: 737 GXPLGDKXKWAKGXXGKTXSXSIXXXPXDEMIDXIXXXXXXXXXXXTFRWHTKKXPRKTH 558
           G  + DK KWA+    K    S      DEMID +           T RWHTKK PRKTH
Sbjct: 187 GGSIEDKVKWAREHLEKPIQVS-NVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTH 245

Query: 557 KVLRKVACIGAWHPXRVSFTVARAGQKGYHHRT 459
           K LRKVACIGAWHP RVS TVARAGQKGYHHRT
Sbjct: 246 KGLRKVACIGAWHPSRVSTTVARAGQKGYHHRT 278


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,413,358
Number of Sequences: 53049
Number of extensions: 633890
Number of successful extensions: 1746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1746
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3839531124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)