Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_L01
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735     34   0.11 
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    34   0.15 
06_03_0804 + 24761974-24763196,24763674-24764019                       33   0.26 
05_07_0157 - 28079181-28079720                                         30   1.8  
07_03_1638 + 28299063-28299625,28301055-28301100,28301596-28301637     29   5.6  
03_03_0028 + 13893813-13893959,13894961-13895264,13896557-138967...    28   7.4  
10_01_0162 + 1820761-1821855                                           28   9.7  
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193     28   9.7  
02_02_0100 - 6783821-6784339,6784815-6784984,6785062-6785164,678...    28   9.7  

>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
          Length = 738

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 583 QFAAFNDCLYRSMSSAGWLLVIDVDE-VVLPH 491
           QF   NDCL+R   +A W    DVDE + LP+
Sbjct: 334 QFLVVNDCLHRYRHAANWTFFFDVDEYIYLPN 365


>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 583 QFAAFNDCLYRSMSSAGWLLVIDVDEVV 500
           QF   NDCL+R   +A W    DVDE +
Sbjct: 337 QFLVVNDCLHRYRHAANWTFFFDVDEYI 364


>06_03_0804 + 24761974-24763196,24763674-24764019
          Length = 522

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 583 QFAAFNDCLYRSMSSAGWLLVIDVDEVV 500
           QF   NDCL+R   +A W    DVDE +
Sbjct: 335 QFLVVNDCLHRYRHAARWTFFFDVDEYI 362


>05_07_0157 - 28079181-28079720
          Length = 179

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +2

Query: 110 RGAVHGGRDRQTVHAAEFACDPIVVEQGPVGGHADGASPWRELPQEVVPELDGVAR 277
           RG V   ++R  V AA FA   +V   G  GG  DGA   +     V+ E+   AR
Sbjct: 69  RGLVDHLQERLGVSAAAFAPAAVVAAPGAAGGGEDGAPAEKTEFDVVIEEVPSSAR 124


>07_03_1638 + 28299063-28299625,28301055-28301100,28301596-28301637
          Length = 216

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 14  LNASLCIYVGQAMVKLFLSVFILXLELVGPPVRGAVHGGRDRQTVHAAE 160
           L+ +   Y  +A+V+   +V    L  VG P+    HGG    TVHA +
Sbjct: 47  LHKNRVYYASEALVRRATAVARPRLAGVGTPIGKFTHGGAFHLTVHALD 95


>03_03_0028 +
           13893813-13893959,13894961-13895264,13896557-13896761,
           13897428-13897646,13897734-13897869,13899130-13899387,
           13899402-13899686
          Length = 517

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 59  LFLSVFILXLELVGPPVRGAVHGGRDRQTVHAAEFAC--DPIVVEQGPVGGHADGASPWR 232
           L++S     +  + P V   VH G    T  A E+AC    +++  G VG   +  + W+
Sbjct: 364 LYVSSISSGIPALAPAVLMGVHDGDGVATKEALEWACAIPDLLLASGEVGRLLNDIAAWK 423

Query: 233 E 235
           E
Sbjct: 424 E 424


>10_01_0162 + 1820761-1821855
          Length = 364

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 91  ARRSTGARCGPRWTGPSDSSCRRI 162
           ARR  GAR    W+  +D  CRR+
Sbjct: 144 ARRERGARLAALWSALADRLCRRV 167


>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
          Length = 516

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 225 GLAPSACPPTGPCSTTIGSHA 163
           G +P+A PPTGP S+   S A
Sbjct: 52  GASPAAAPPTGPASSPAASPA 72


>02_02_0100 -
           6783821-6784339,6784815-6784984,6785062-6785164,
           6785291-6785454,6786781-6786821,6786933-6787129
          Length = 397

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/25 (64%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
 Frame = -2

Query: 380 GGRQGGDGAAY-DGSQD---APLGD 318
           GGR GGDG AY D S D   AP GD
Sbjct: 39  GGRDGGDGGAYGDASGDDGRAPGGD 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,140,148
Number of Sequences: 37544
Number of extensions: 364606
Number of successful extensions: 1218
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)