Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_K24
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466...    30   1.8  
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351     30   2.3  
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365...    30   2.3  
11_06_0610 - 25449085-25453284                                         29   4.1  
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032...    28   7.2  
02_05_1233 - 35112629-35112844,35112922-35112987,35113222-351132...    28   7.2  

>01_06_1141 +
           34845834-34845931,34846110-34846198,34846535-34846686,
           34847473-34847583,34847702-34847818,34847989-34848156,
           34848563-34848703
          Length = 291

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 132 HPLNDSPALLHPTSNPLRGQNPDEVGGLPRSTLQPDGAAH 251
           HPL   P       NP  G  P++  G PR T+  +GAAH
Sbjct: 91  HPLPQVPNFCGNGFNPWTGTLPEK-NGFPRGTMGWEGAAH 129


>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
          Length = 415

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +2

Query: 89  HGVVSRPRA-QGF*SPPTKRLPCTLTPDVQSPPRSEPG*--GRGATAVNTTTRRRGSPQG 259
           HG +S PR+     +P  +R P  +TP V       P     RG  A +   + RG P G
Sbjct: 50  HGALSAPRSGDEEITPWWRRSPSAVTPPVYPHVERSPSPPIARGWPADDDERQERGEPSG 109

Query: 260 RPA 268
            PA
Sbjct: 110 SPA 112


>07_03_0111 +
           13535912-13535972,13536081-13536142,13536418-13536510,
           13537577-13537649,13537876-13538265,13538337-13538404,
           13539334-13539375,13540211-13540735,13540817-13540974,
           13541078-13541636,13542438-13542500,13542579-13542680,
           13542779-13543096,13543175-13543267,13543489-13543590,
           13543678-13543782,13544190-13544323,13545097-13545280,
           13545701-13545832,13546215-13546327,13546468-13546558,
           13547138-13549339
          Length = 1889

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +2

Query: 131 PPTKRLPCTLTPDVQSPPRSEPG*GRGATAVNTTTRRRGSPQGRPA 268
           PP    P     D  + P  EP   +  +A  T  RR GSP   PA
Sbjct: 123 PPPPPPPPPSPKDAAADPAKEPSGSKAGSAAATGGRRTGSPPPSPA 168


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +3

Query: 168 TSNPLRGQNPDEVGGLPRSTLQ-PDGAAHPKDAQPTEPSXRIEXSETSXVSVRQPVGPP 341
           T +P +   P+E    P S  + P   AHP    P+E S      E+S  +  +   PP
Sbjct: 767 TPSPPKSSPPEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPP 825


>07_03_1546 + 27602598-27602917,27602995-27603052,27603130-27603252,
            27603896-27603992,27604095-27604131,27604244-27604349,
            27604547-27604604,27604705-27604802,27604911-27605030,
            27605622-27605667,27606336-27606522,27606747-27607263,
            27607361-27607453,27608101-27608286,27608364-27608574,
            27609263-27609387,27609518-27609664,27610114-27610236,
            27610445-27610799,27611076-27611305,27611785-27611877
          Length = 1109

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 141  NDSPALLHPTSNPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSXRIEXSETSXVSV 320
            N+  +   P++NP   Q P      P S  Q  G   P  A P  P+  ++ ++TS VS 
Sbjct: 945  NNPTSRFMPSNNPGFVQRPGLSPVQPSSPTQAQGQPQPVVAPPAPPA-TVQTADTSKVSA 1003

Query: 321  R-QPV 332
              +PV
Sbjct: 1004 ELKPV 1008


>02_05_1233 -
           35112629-35112844,35112922-35112987,35113222-35113282,
           35115319-35115401,35115483-35115563,35115661-35115693,
           35115841-35115942,35116023-35116118,35116205-35116366,
           35116469-35116660,35116742-35116852,35116940-35117011,
           35117111-35117324,35117422-35117699
          Length = 588

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 415 STGRSIHSXERAKMLVTRRAGSPPQVALEL 504
           +TG +IH+ E  KM VTRR   P    LE+
Sbjct: 521 TTGATIHTTEGLKMTVTRRTKPPVIPNLEM 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,327,621
Number of Sequences: 37544
Number of extensions: 321622
Number of successful extensions: 957
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)