Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_K24
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    31   0.69 
AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical ...    31   1.2  
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    30   1.6  
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    30   1.6  
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      30   1.6  
Z22177-7|CAA80149.1|  171|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   8.5  

>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
 Frame = +3

Query: 114 PKDFRAHPLND-SPALLHPTSNPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTE-PSXR 287
           P      P N+ SP  + P+  P     P      P    QP G   P    P+E P   
Sbjct: 77  PTSVVPQPSNEPSPGTVAPSDEPSPSGPPSPGPVNPSEDPQPSGPPSPGPVDPSEDPQPS 136

Query: 288 IEXSETSXVSVRQPVGPP 341
           +E SE       QP GPP
Sbjct: 137 VEPSED-----HQPSGPP 149


>AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical
           protein C30F12.5 protein.
          Length = 392

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +3

Query: 108 RGPKDFRAHPLN----DSPALLHPTSNPLRGQNPDEVGGLPRSTLQPDGAAHP 254
           +G KD+    +     D P + HP  +PL   +P   G +PR+ L P+GA  P
Sbjct: 303 KGQKDYENGSMGQLPIDEPRIGHPLYSPLPPIDPT-YGTIPRARLAPNGAPPP 354


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
            isoform a protein.
          Length = 1409

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 145  SFSGWALKSLGPRSAHNTMQIVESHIPRAPHLRG 44
            S++GW   S+ P+SA++ M ++E  + R   L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
            isoform b protein.
          Length = 1444

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 145  SFSGWALKSLGPRSAHNTMQIVESHIPRAPHLRG 44
            S++GW   S+ P+SA++ M ++E  + R   L G
Sbjct: 1337 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1370


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 145  SFSGWALKSLGPRSAHNTMQIVESHIPRAPHLRG 44
            S++GW   S+ P+SA++ M ++E  + R   L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335


>Z22177-7|CAA80149.1|  171|Caenorhabditis elegans Hypothetical
           protein ZK512.8 protein.
          Length = 171

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 147 SPALLHPT--SNPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSXRIEXSETS 308
           SP   H +  SNP   +  DE+  L R  +  D   HP + +  +P  + E S TS
Sbjct: 43  SPVSTHLSLASNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVTS 98


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
            protein Y46B2A.3 protein.
          Length = 1145

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/58 (27%), Positives = 22/58 (37%)
 Frame = -3

Query: 364  PEHQRHRXGGPTGCRTETXDVSEXSIRXEGSVGWASLG*AAPSGCSVDRGSPPTSSGF 191
            P H+    G   G    T D S    R   + GW +      SG S      PT++G+
Sbjct: 868  PTHRPTTAGWTNGANGTTRDTSRGFTRRPTTAGWTNGANGTTSGTSRGFTQRPTAAGW 925


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,485,543
Number of Sequences: 27780
Number of extensions: 236774
Number of successful extensions: 746
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)